View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4552_low_2 (Length: 370)
Name: NF4552_low_2
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 41591952 - 41592299
Alignment:
| Q |
16 |
atatacaccttgatggataaagaaatggagagagtgatccgataagaagagagatataaaggaaaataagaagttgaattaggattcgagtgttaaggat |
115 |
Q |
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| T |
41591952 |
atatacaccttgatggataaagaaatggagagagtgatccgataagaagagagatataaaggaaaataagaagttgaattaggattcgagtgttaaggat |
41592051 |
T |
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| Q |
116 |
accnnnnnnnagtacctaaaaccacaatacttcattgccctaggccttcggtcgctatagacacttgtatttatgaaaaacaa-------aatgctcagt |
208 |
Q |
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| T |
41592052 |
acctttctttagtacctaaaaccacaatacttcattgccctaggccttcggtcgctatagacacttgtatttatgaaaaacaaaatgcagaatgctcagt |
41592151 |
T |
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| Q |
209 |
tttgagcctaacatgtgtgtccgagtgatggatattcttaaggctccgctacaacgttcacgtgtgtgcagcgtggtgacacatcaggtgtgaacatggc |
308 |
Q |
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| T |
41592152 |
tttgagcctaacatgtgtgtccgagtgatggatattcttaaggctcagctacaacgttcacgtgtgtgcagcgtggtgacacatcaggtgtgaacatggc |
41592251 |
T |
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| Q |
309 |
tctgttggtgaccatggcaaatattcatttctctatatctgatctgtg |
356 |
Q |
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| T |
41592252 |
tctgttggtgaccatggcagatattcatttctctgtatctgatctgtg |
41592299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 227
Target Start/End: Original strand, 41585782 - 41585877
Alignment:
| Q |
131 |
ctaaaaccacaatacttcattgccctaggccttcggtcgctatagacacttgtatttatgaaaaacaaaatgctcagttttgagcctaacatgtgtg |
227 |
Q |
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| T |
41585782 |
ctaaaaccacaatagtttattggcccaggcctttagtcgccatagacacttgtacttatggaaaatgaaatgttca-atttgagcccaacatgtgtg |
41585877 |
T |
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