View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4552_low_6 (Length: 266)

Name: NF4552_low_6
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4552_low_6
NF4552_low_6
[»] chr7 (1 HSPs)
chr7 (18-254)||(44501197-44501433)
[»] chr3 (8 HSPs)
chr3 (40-95)||(20977477-20977532)
chr3 (40-250)||(20994819-20995029)
chr3 (40-119)||(2996371-2996450)
chr3 (45-104)||(20981806-20981865)
chr3 (40-193)||(20949493-20949649)
chr3 (40-113)||(45856777-45856850)
chr3 (43-169)||(20948805-20948934)
chr3 (45-113)||(45881805-45881873)
[»] chr5 (2 HSPs)
chr5 (130-204)||(7976609-7976683)
chr5 (48-129)||(38142015-38142096)
[»] chr4 (1 HSPs)
chr4 (41-107)||(3978221-3978287)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 44501433 - 44501197
Alignment:
Q  18 atagcattcttcagattttcacacttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaat 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501433 atagcattcttcagattttcacactttcaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaat 44501334  T
Q  118 ttcagccataatggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagtgtccttgctg 217  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||    
T  44501333 ttcagccataatggttgcttggagtttcacctactcaaaaggattgtgaattgtgctatttcacacatagtccagcggtcaggacttagtgtccatgctg 44501234  T
Q  218 acaatgcacaaattccgcctagcatattttcatctca 254  Q
    |||||||||||||||||||||||||||||||||||||    
T  44501233 acaatgcacaaattccgcctagcatattttcatctca 44501197  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 20977477 - 20977532
Alignment:
Q  40 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctc 95  Q
    ||||||||||||||||  ||||||||||||||| |||||||||||| |||||||||    
T  20977477 acttacaagatattcaccaaattcgtgtctaagattttatctcttcgcgattcctc 20977532  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 20995029 - 20994819
Alignment:
Q  40 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactc-tcaatttcagc--cataatggtcgct 136  Q
    |||| |||||||||||  | ||||||||||||| ||||||||||||  ||||||||||||||||| ||  ||| | | |||||||  |||||||| ||||    
T  20995029 actttcaagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcacttcagtctcttgattttcagcgtcataatggccgct 20994930  T
Q  137 tggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggacttagtgtc-cttgctgacaatgcacaaattccgc 235  Q
    | |||  |||   ||| |||| |||||||||||  ||||||| |||||| ||||||| || |  |||| ||||| |||| ||||| ||| |||||||| |    
T  20994929 ttgagcctca---acttaaaaagattgtgaattacgctatttcacacaatgtccagcagttacaactttgtgtcacttg-tgacattgcgcaaattcctc 20994834  T
Q  236 ctagcatattttcat 250  Q
     |||| |||||||||    
T  20994833 atagcttattttcat 20994819  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 2996450 - 2996371
Alignment:
Q  40 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaattt 119  Q
    |||||||||| |||||  ||||| |||||||||||||||||||||  |||||||||||| ||| | || |||||| ||||    
T  2996450 acttacaagaaattcaccaaatttgtgtctaaggttttatctctttgcgattcctctatttcattgcagactctcgattt 2996371  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 20981865 - 20981806
Alignment:
Q  45 caagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcact 104  Q
    |||||||||||  | ||||||||||||| ||||||||||||  |||||||||||||||||    
T  20981865 caagatattcaccacattcgtgtctaagattttatctcttcgtgattcctctatctcact 20981806  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 20949493 - 20949649
Alignment:
Q  40 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactc-tcaatttcagc--cataatggtcgct 136  Q
    ||||||||||||||||  ||||||||||||||  |||||||||||   |||||||||||| || || |  ||| | | ||| |||  |||| |||||| |    
T  20949493 acttacaagatattcaccaaattcgtgtctaaaattttatctctttgtgattcctctatcacattataagctcttgattttaagcatcatattggtcgtt 20949592  T
Q  137 tggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagc 193  Q
    | |||  |||| |||||||||||||||||||||  ||||||  |||||| |||||||    
T  20949593 tagagcctcacatactcaaaaggattgtgaattacgctattaaacacaatgtccagc 20949649  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 113
Target Start/End: Complemental strand, 45856850 - 45856777
Alignment:
Q  40 acttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct 113  Q
    |||| |||||||||||  || || ||||||||||||||||||||||  |||||||||||| |||| ||| ||||    
T  45856850 actttcaagatattcaccaactttgtgtctaaggttttatctcttcgtgattcctctatcgcactccacgctct 45856777  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 20948805 - 20948934
Alignment:
Q  43 tacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttca---gccataatggtcgcttgg 139  Q
    |||||||||||||  || || ||||||||| ||||||||||||  ||| |||||||| || ||||||||||  |||| |   | |||| || |||||| |    
T  20948805 tacaagatattcaccaagtttgtgtctaagattttatctcttcgtgatccctctatcgcaatacacactcttgattttaagcgtcatattgttcgcttag 20948904  T
Q  140 agtttcacctactcaaaaggattgtgaatt 169  Q
    ||  |||| |||| ||||||||||||||||    
T  20948905 agcctcacatacttaaaaggattgtgaatt 20948934  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 45881873 - 45881805
Alignment:
Q  45 caagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactct 113  Q
    |||||||||||  ||||| ||||| ||||||||||||||    |||||||||||| |||| ||||||||    
T  45881873 caagatattcaccaaatttgtgtcgaaggttttatctctcagtgattcctctatcacactccacactct 45881805  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 204
Target Start/End: Complemental strand, 7976683 - 7976609
Alignment:
Q  130 ggtcgcttggagtttcacctactcaaaaggattgtgaattgtgctattttacacaaagtccagctgtcaggactt 204  Q
    |||||||| |||  |||| ||||||||||||||||||||| |||||||| |||||| ||||||| || |||||||    
T  7976683 ggtcgcttagagcctcacttactcaaaaggattgtgaattatgctatttcacacaatgtccagcggttaggactt 7976609  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 38142096 - 38142015
Alignment:
Q  48 gatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactacacactctcaatttcagccataat 129  Q
    ||||||||| |||||||||  || ||||||| ||||||  ||||||||| || ||||  || ||||||||||||| ||||||    
T  38142096 gatattcaacaaattcgtgcatagggttttaactcttcgtgattcctctctcgcactgaactctctcaatttcagacataat 38142015  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 3978221 - 3978287
Alignment:
Q  41 cttacaagatattcaataaattcgtgtctaaggttttatctcttcacgattcctctatctcactaca 107  Q
    ||||||||| |||||  | ||| |||||||| ||||||| ||||| ||||||||||||| |||||||    
T  3978221 cttacaagaaattcaccagattagtgtctaaagttttatttcttcgcgattcctctatcgcactaca 3978287  T

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