View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4552_low_7 (Length: 257)
Name: NF4552_low_7
Description: NF4552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4552_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 24203292 - 24203512
Alignment:
| Q |
19 |
atttgagtatgcagtcatcaccttgcaagccagtttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttc |
118 |
Q |
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| T |
24203292 |
atttgagtacgcagtcatcaccttgcaagccagtttgtaagggctgagttagacccaacctaaattctaagtattcc-------actggaatatcttttg |
24203384 |
T |
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| Q |
119 |
ttgacttacaccgctttgaatttaatgactttgtccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatacttt |
218 |
Q |
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| T |
24203385 |
ttgacttaaaccagtttgaatttaatgactt-gtccttgaagtattctgcaagagtttataggttggttcttgtccttgaatttataccatacatacttt |
24203483 |
T |
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| Q |
219 |
ttaagcattaaggtttattggttcctttg |
247 |
Q |
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| T |
24203484 |
ttaagcattaaggtttattggttcctttg |
24203512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 29409987 - 29409796
Alignment:
| Q |
52 |
tttgtaaggtttgagttagacccaacctaaattctaggtgttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt-- |
149 |
Q |
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| T |
29409987 |
tttgtaagggttgagttaggcccaccctaaattctaagagttaattgctaaactggaatatcttttattgacatacacctctttgaatttaatgacttca |
29409888 |
T |
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| Q |
150 |
-------tg-tccttgaagtattcttcaagagtttataggttggttcttgtccttgaatttataccttacatactttttaagcattaaggtt |
233 |
Q |
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| T |
29409887 |
caaatcgtgttggttggaatatactgcaagagtttataggcgggttcttgtccttgaactagtaccatacatactttttaagcattaaggtt |
29409796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 27560418 - 27560361
Alignment:
| Q |
190 |
tgtccttgaatttataccttacatactttttaagcattaaggtttattggttcctttg |
247 |
Q |
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| T |
27560418 |
tgtccttgaattaataccatacatactttttaagcattaaggtttattgattcctttg |
27560361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 27560486 - 27560428
Alignment:
| Q |
91 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
149 |
Q |
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| T |
27560486 |
gttacctactaaacttgaataccttttgttgatttacacctctttgaattgaatgactt |
27560428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 36668010 - 36667952
Alignment:
| Q |
91 |
gttacctactaaactggaatatcttttcttgacttacaccgctttgaatttaatgactt |
149 |
Q |
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| T |
36668010 |
gttacctactaaactggaatactgtttgtcgatttacacctctttgaatttaatgactt |
36667952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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