View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553-Insertion-1 (Length: 767)
Name: NF4553-Insertion-1
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 200 - 577
Target Start/End: Original strand, 22595262 - 22595643
Alignment:
| Q |
200 |
agacgtatgtgcttggatacacatttgtaaaatcacggcaaataactatattaacgcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
299 |
Q |
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| T |
22595262 |
agacgtatgtgcttggatacacgtttgcaaaatcacggcaaataactatattaactcagaaacaacaatcaatcacttcgcattttgacatcaaaagacc |
22595361 |
T |
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| Q |
300 |
ttagtcatgtggagtcgatgaaaataattcaaaccaaacatatatttggtgtataagtcatctcactttatactcaacgtctaatttttcatccatccgg |
399 |
Q |
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| T |
22595362 |
ttagtcatgtggaatcgatgaaaataattcaaaccgaacatatatttggtgtataagtcatctcactttatactcaaagtctaatttttcatccatccgg |
22595461 |
T |
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| Q |
400 |
tttaagagttctaactcacat----ttactatacctacactttttcactcatgtagctctctgtttcttcaatcaaaataatgcagagatatgagaattt |
495 |
Q |
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| T |
22595462 |
tttaagagttctaactcacatttacttactatacctacactttttcactcatgtagctctctgtttcttcaatcaaaataatgcagagatatgagaattt |
22595561 |
T |
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| Q |
496 |
tccagctgaagaatccactaacttcagctcacattttcatgccttcaacaaacacaaagcaatgacttgtataaccctctaa |
577 |
Q |
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| T |
22595562 |
tccagctgaaaaatccactaacttcagctcgcattttcatgccttcaacaagcacaaagcaatgacttgtataaccctctaa |
22595643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 7 - 202
Target Start/End: Original strand, 22594896 - 22595088
Alignment:
| Q |
7 |
acaaaacatacaccaagataaattatcgtgtttggaggtaaatataatccttaaagttaaaatcaatttcaaaaaacaagaagnnnnnnnnntactaaaa |
106 |
Q |
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| T |
22594896 |
acaaaacatacaccaagataaattatcgggtttggaggtaaatataatccttaaagttaaaatcaatttcaaaaaacaagaa--aaaaaaaatactaaaa |
22594993 |
T |
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| Q |
107 |
gcaactaaatatatgaaagtgaaatttatatttttaaaagcacttttataagttaatcagccataaagatttctttcataatgttttgcaacgaga |
202 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22594994 |
gcaactaaatatatgaaagtgaa-tttatatttttaaaagcacttttataagtcaatcagccatgaagatttctttcataatgttttgcaacgaga |
22595088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 645 - 767
Target Start/End: Original strand, 22595755 - 22595877
Alignment:
| Q |
645 |
ttcaaggagagttcacattgacacaaatcatatatgtatatatatgataaatgtaatcacttatcattttctgtgtaacaaatttcataaaccatcatnn |
744 |
Q |
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| T |
22595755 |
ttcaaggagagttcacattgacacaaatcatatatgtatatatatgataaatgtaatcacttatcattttctgtgtaacaaattacataaaccatcataa |
22595854 |
T |
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| Q |
745 |
nnnnnnctacaaacctctaccca |
767 |
Q |
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| T |
22595855 |
aaaaaactacaaacctctaccca |
22595877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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