View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4553-Insertion-2 (Length: 709)
Name: NF4553-Insertion-2
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553-Insertion-2 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 69 - 709
Target Start/End: Original strand, 28062291 - 28062931
Alignment:
| Q |
69 |
actctttaacatttagcttaggaacaaacataaaagacattaaggtaattttcagatgcgtgagagtaattttaaaagctcaaatagcaattttcataat |
168 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28062291 |
actctttaacatttagcttagaagcaaacataaaagacattaaagtaattttcagatgcgtgagagtaattttaaaagctcaaatagcaattttcataat |
28062390 |
T |
|
| Q |
169 |
ctaattgctcgacaaatgacaacaagccatattccataggctcattgggcttttaaattgccaaaccttgtaaatatcacgatcactagggtcaatttag |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28062391 |
ctaattgctcgacaaatgacaacaagccatattccataggctcattgggcttttaaattgccaaaccttgtaaatatcacgatcactagggtcaatttag |
28062490 |
T |
|
| Q |
269 |
tcattttaatttttaattatgatttatgaccttgttcgttgtattgtctttctcttgaacttgccttcaccttctacactttcttccccctcacactcac |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28062491 |
tcattttaatttttaattatgatttatgaccttgttcgttgtattgtctttctcttgaacttgccttcaccttctacactctcttccccctcacactcac |
28062590 |
T |
|
| Q |
369 |
gaacacaaaaatcccaatcccaattaaacgcaaaacctctgcaacaaatcagggtttcaatctcttcccaaattctctctttgctgcaatggaaccacca |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28062591 |
gaacacaaaaatcccaatcccaattaaacgcaaaacctctgcaacaaatcagggtttcaatctcttcccaaattctctctttgctgcaatggaaccacca |
28062690 |
T |
|
| Q |
469 |
atgtacgatcactctcaacccttgaacaccaccgtaccaatcaccgctggcgaaagcgacgacggttccggccccgacgccggcgtcgatgctcaacatc |
568 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28062691 |
atgtacgatcactctcaacccttgaacaccaccgtaccaatcaccgctggcgaaagcgacgacggttccggccccgacgccggcgtcgacgctcaacatc |
28062790 |
T |
|
| Q |
569 |
aaattcaatacgaaactcacggtatggatgattccaactccgatgctgtttacggcaacggcagtgaaaatcctgacttcgcactccaaagttttgatga |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
28062791 |
aaattcaatacgaaactcacggtatggatgattccaactccgatgctgtttacggcaacggcagtgaaaatcctgaattcgcacttcaaagttttgatga |
28062890 |
T |
|
| Q |
669 |
atctgatcagctgacgctgtcgtttcgtggtcaagtttatg |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28062891 |
atctgatcagctgacgctgtcgtttcgtggtcaagtttatg |
28062931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 28062271 - 28062332
Alignment:
| Q |
8 |
ccaatgatagttaactattcactctttaacatttagcttaggaacaaacataaaagacatta |
69 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
28062271 |
ccaatgatagttaactattcactctttaacatttagcttagaagcaaacataaaagacatta |
28062332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 18054073 - 18054129
Alignment:
| Q |
107 |
attaaggtaattttcagatgcgtgagagtaattttaaaagctcaaatagcaattttc |
163 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||| |||||| ||| |||||||||| |
|
|
| T |
18054073 |
attaaggtaattttcaggtgcaggagagcaattttcaaagcttaaagagcaattttc |
18054129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 532 - 709
Target Start/End: Original strand, 26902886 - 26903063
Alignment:
| Q |
532 |
ggttccggccccgacgccggcgtcgatgctcaacatcaaattcaatacgaaactcacggtatggatgattccaactccgatgctgtttacggcaacggca |
631 |
Q |
| |
|
|||||||||||| | || |||||||| ||||||| | ||||||||||||||||||| | | | ||||||||||| | ||||| |||||| || || || |
|
|
| T |
26902886 |
ggttccggccccaatgcgggcgtcgacgctcaacgttaaattcaatacgaaactcatgctctagatgattccaaattcgatgttgtttatgggaatggag |
26902985 |
T |
|
| Q |
632 |
gtgaaaatcctgacttcgcactccaaagttttgatgaatctgatcagctgacgctgtcgtttcgtggtcaagtttatg |
709 |
Q |
| |
|
||||||||| ||| ||| |||| ||| | |||||||| ||||||||| | |||||||||||||||| ||||||||||| |
|
|
| T |
26902986 |
gtgaaaatcatgaattcacacttcaacgctttgatgagtctgatcagtttacgctgtcgtttcgtgatcaagtttatg |
26903063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 8923318 - 8923373
Alignment:
| Q |
107 |
attaaggtaattttcagatgcgtgagagtaattttaaaagctcaaatagcaatttt |
162 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| ||| | ||| ||||||||| |
|
|
| T |
8923318 |
attaaggtaattttccgatgcgtgagagcaattttagaagtttaaaaagcaatttt |
8923373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University