View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553-Insertion-3 (Length: 637)
Name: NF4553-Insertion-3
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553-Insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 25643959 - 25643511
Alignment:
| Q |
8 |
gtcacaacatcacttcaattattcacaaatcattgcaatccacttcaacctacttcacnnnnnnnnnnnnnnnnnngattaaaacctacttaactcttga |
107 |
Q |
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| T |
25643959 |
gtcagaacatcacttcaattattcacaaatcattgcaatccacttcaatctacttcactttttcttttttatttttgattaaaacctacttcactcttga |
25643860 |
T |
|
| Q |
108 |
cctgcattaattgaacaaaatttattaaagatcacttccttcaatgaaacaatgtatgagtctcccttttatgaatcgacggtctaaaaaagttttacgc |
207 |
Q |
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| T |
25643859 |
cctgcattaattgaacaaaatttattgcagatcacttccttcaatgaaacaatgtatgagtctcctttttatgaatcgatggtgtaaaaaagttttacgc |
25643760 |
T |
|
| Q |
208 |
acatcacaaccaatcatgtgcgtaaccttgaaggtggttgttgataaaagtcacatattagtaattatctgacctttatgattgattgcgtatcaccgtc |
307 |
Q |
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| T |
25643759 |
acatcacaaccaatcatgtgcgtaaccttgaaggtggttgttgataaaagtcaaatattagtaattatctgacctttatgattgattgcgtatcaccgtc |
25643660 |
T |
|
| Q |
308 |
acttttgattcaaagcgtgtctggtctccgacacgtgttagtttcttacaccgacacatgtatattgaattatgttgttttctcatgttaagtgttgtgt |
407 |
Q |
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||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25643659 |
acttttgattcaaagcgtgtctggtgtctgacacgtgttagattcttacaccgacacatgtatattgaattatgttgttttctcatgttaagtgttgtgt |
25643560 |
T |
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| Q |
408 |
tatatctggtagcgttgtgtttgtctatgtcaatgcttcatagattgat |
456 |
Q |
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| T |
25643559 |
tatatctggtagcgttgtgtttgtctatgtcaatgcttcatagattgat |
25643511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 519 - 636
Target Start/End: Complemental strand, 25643459 - 25643342
Alignment:
| Q |
519 |
gaaatctaactggggcatcaatcactgaggcgcttcctcagattattcctcattgcttcactgcattcttccgcacgagcttgcagagcaacgactttga |
618 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
25643459 |
gaaatctaactggtgcatcaatcactgaggcgcttcctcagattattcctcattgcttcactgcattcttccgcacaagcttgcagagcaacgacgttga |
25643360 |
T |
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| Q |
619 |
cataggagagataagcta |
636 |
Q |
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| T |
25643359 |
tataggagagataagcta |
25643342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 25641059 - 25641003
Alignment:
| Q |
106 |
gacctgcattaattgaacaaaatttattaaagatcacttccttcaatgaaacaatgt |
162 |
Q |
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| T |
25641059 |
gacctgcatcaattgaacaaaattcattaaattttacttccttccatgaaacaatgt |
25641003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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