View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553-Insertion-6 (Length: 228)
Name: NF4553-Insertion-6
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 49552300 - 49552474
Alignment:
| Q |
54 |
caaccacatcaaaatccaacttcaaagttcaccacatgttaattttaattatatttatttaaatctcttaaggtttgattttacaatggaatgaattcta |
153 |
Q |
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| T |
49552300 |
caaccacatcaaaatccaacttcaaagttcaccacatgttaattttaattatatttatttaaatctcttaaggtttgattttacaatggaatgaattcta |
49552399 |
T |
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| Q |
154 |
ttggaaattctaactaaaataattattgatcagaatttatacacttttgatcgaagtgtggattatcataactta |
228 |
Q |
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| T |
49552400 |
ttggaaattctaactaaaataattattgatcagaatttatacacttttgatcgaagtgtggattatcataactta |
49552474 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 49551162 - 49551196
Alignment:
| Q |
7 |
agtcttcgcatttgcaggcgggggatatttgattt |
41 |
Q |
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| T |
49551162 |
agtcttcgcatttgcaggcggaggatatttgattt |
49551196 |
T |
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