View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553-Insertion-8 (Length: 195)
Name: NF4553-Insertion-8
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553-Insertion-8 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 47299054 - 47299242
Alignment:
| Q |
7 |
actccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcga |
106 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47299054 |
actccactgcataaccaaatgggtttccacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccgtagtatccaacaagtggcga |
47299153 |
T |
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| Q |
107 |
attgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgac |
195 |
Q |
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| T |
47299154 |
attgttaacattaaacctcgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgac |
47299242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 47292447 - 47292635
Alignment:
| Q |
7 |
actccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcga |
106 |
Q |
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| T |
47292447 |
actccactgcataaccaaatggatttccacaaagcttccctgcagtggtgacggccgctgggtaagcaaaacagttaccgtaatatccaacaagtggcga |
47292546 |
T |
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| Q |
107 |
attgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgac |
195 |
Q |
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| T |
47292547 |
attgttaatgttaaacctcgagcgtgcattgacgacgcacatcattcgtacctctttatccgcctctaactgcaatgcttttgtgcgac |
47292635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 47267801 - 47267613
Alignment:
| Q |
7 |
actccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcga |
106 |
Q |
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| T |
47267801 |
actccacagcataacctaatgagtttccacaaagcttccctgcagtggtgacggccgccgggtaagcaaaacaattaccgtagtatccaacaagtggcga |
47267702 |
T |
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| Q |
107 |
attgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcgac |
195 |
Q |
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| T |
47267701 |
attgttagcattaaacctcgaacgtgcattgacaatacacatcattcgtatctcgtcatctgcctctaactgcaatgcttttgtgcgac |
47267613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 47283764 - 47283580
Alignment:
| Q |
9 |
tccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaat |
108 |
Q |
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| T |
47283764 |
tccactgcataacctaaagggtttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaat |
47283665 |
T |
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| Q |
109 |
tgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcg |
193 |
Q |
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| T |
47283664 |
ggtcagccctaaaccttgaacgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgtgcg |
47283580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 47279171 - 47278990
Alignment:
| Q |
9 |
tccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcgaat |
108 |
Q |
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| T |
47279171 |
tccactccataacctaaaggatttccacaaagcttccctgcggtggtgacagcagccgggaaagcaaaacagttaccataatatccaacaagtggcgaat |
47279072 |
T |
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| Q |
109 |
tgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgt |
190 |
Q |
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| T |
47279071 |
ggtcagccctaaaccttgaacgtgcattaacgatgcacatcattcgtacttcttcatctggctctaactgcaatgcttttgt |
47278990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 47242897 - 47242711
Alignment:
| Q |
7 |
actccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcga |
106 |
Q |
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|||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| ||||| | | |||||| || ||||| || |||||||||| || |
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| T |
47242897 |
actccactgcataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatgcaattaccgtaatatccaacaaacaaaga |
47242798 |
T |
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| Q |
107 |
attgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcg |
193 |
Q |
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| T |
47242797 |
agggttagcactaaacctggaacgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcg |
47242711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 47257024 - 47256835
Alignment:
| Q |
7 |
actccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcga |
106 |
Q |
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|||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| ||||| | | |||||| |||||| ||||| ||||||| || | ||| |
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| T |
47257024 |
actccactgcataacctaattggtttccacaaagctcctttgcggtggtgactgccgccgagaaagcaatacagttgccataatatccaatgagcgacga |
47256925 |
T |
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| Q |
107 |
a---ttgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcg |
193 |
Q |
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| T |
47256924 |
acggttattagcactaaacctcgagcgtgcattaacgatgcacatcattcgcacatcttcatctggttctacctgcaatgcttttgtgcg |
47256835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 5e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 32731564 - 32731378
Alignment:
| Q |
7 |
actccactgcataaccaaatgggttttcacaaagcttccttgcagtggtgacggccgctgggtaagcaaaacagttaccatagtatccaacaagtggcga |
106 |
Q |
| |
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|||||||||||||||| ||| ||||| ||||||||| | |||| |||||||| ||||| | | |||||| ||| ||||| || ||||||| || || |
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| T |
32731564 |
actccactgcataacctaattggtttccacaaagctcctttgcggtggtgacagccgccgagaaagcaatacaattaccgtaatatccaataaacaaaga |
32731465 |
T |
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| Q |
107 |
attgttaacattaaaccttgagcgtgcattggcgatgcacatcattcgtacctcttcatctgcctctaactgcaatgcttttgtgcg |
193 |
Q |
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| T |
32731464 |
agggttagcactaaacctggaacgtgcattaacgatgcacatcattcgtacctcttcatctggctctatctgcaatgcttttgtgcg |
32731378 |
T |
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