View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553-Insertion-9 (Length: 183)
Name: NF4553-Insertion-9
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553-Insertion-9 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 49018 - 49195
Alignment:
| Q |
8 |
taatacaccccctccccttccttttttgtgttaattgtctttattattaggtctgtctatttctatgtctatgtttatgtttatgtaagtagtaattatc |
107 |
Q |
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| T |
49018 |
taatacaccccctccccttccttttttgtgttaattgtctttattattaggtctgtctatttctatgtctatgtttatgtttatgtaagtagtaattatc |
49117 |
T |
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| Q |
108 |
ttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgag--ctctctcaattgaagagtatgtatcttag |
183 |
Q |
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| T |
49118 |
ttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctctcaattgaagagtatgtatcttag |
49195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 8e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 25514998 - 25514883
Alignment:
| Q |
71 |
tatgtctatgtttatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagct---ctctcaattga |
167 |
Q |
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| T |
25514998 |
tatgtctatgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtctagtctaatccgagctctcaattga |
25514899 |
T |
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| Q |
168 |
agagtatgtatcttag |
183 |
Q |
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| T |
25514898 |
agagtatgtatcttag |
25514883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 42802558 - 42802647
Alignment:
| Q |
90 |
atgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctcaattgaagagtatgtatctt |
181 |
Q |
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| T |
42802558 |
atgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtctaatcagag--ctctcaattgaagaatatgtatctt |
42802647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 25520378 - 25520491
Alignment:
| Q |
73 |
tgtctatgtttatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagag-----tagtctaatctgagctctctcaattga |
167 |
Q |
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| T |
25520378 |
tgtctatgtctatttctatgtaagtagtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatctagtctaatctgag--ctctcaattga |
25520475 |
T |
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| Q |
168 |
agagtatgtatcttag |
183 |
Q |
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| T |
25520476 |
agggtatgtatcttag |
25520491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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