View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_high_12 (Length: 234)
Name: NF4553_high_12
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 43260850 - 43261046
Alignment:
| Q |
17 |
cagagacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaa |
116 |
Q |
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| T |
43260850 |
cagagacactattattaatgaaaaagcaaacatatatttaaggaaaaattgagtgagagatagaccttaacaggaggagaagaagctgccttgacaacaa |
43260949 |
T |
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| Q |
117 |
aggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacga |
213 |
Q |
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| T |
43260950 |
aggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagtaagagatgatgacga |
43261046 |
T |
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Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 43257263 - 43257450
Alignment:
| Q |
19 |
gagacactattattaatgaaaaagcaaacatatatttaagaaaaaattgagtgagagataaaccttaacaggaggagaagaagctgccttgacaacaaag |
118 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
43257263 |
gagacactattattaat-aaaaagcaaacatataattaagaaaaatttgagtgagagataaaccttgacaggagcag------ctgccttgacaacaaag |
43257355 |
T |
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| Q |
119 |
gaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgcctcacagcttcagctgcaaaagtaagagatgatgacga |
213 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
43257356 |
gatccttttctagaagacccaattgaagatgggagtgatcttgctccaaaactctgtcttacagcttcagctgcaaaagtaagagatgacgacga |
43257450 |
T |
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