View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_1 (Length: 554)
Name: NF4553_low_1
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 447
Target Start/End: Original strand, 1156478 - 1156900
Alignment:
| Q |
23 |
gtatcataatcatatctatatatcaaagagtgaattgaacnnnnnnnaaaatagccaaaatttattccaatagcaaaaacatcacaagttgagatgttgt |
122 |
Q |
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| T |
1156478 |
gtatcataatcatatctatatatcaaagagtgaattgaactttttttaaaatagccaaaatttattccaatagcaaaaacatcacaagctgagatgttgt |
1156577 |
T |
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| Q |
123 |
gcttggcaaaagccacaggtacacaggaacagaagaaacacaagcaaggctgaaaaattaacgcctgagccccacactagcaatcacaaaatacatnnnn |
222 |
Q |
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| T |
1156578 |
gcttggcaaaagccacaagtacacaggaacagaagaaacacaagcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaattacataaaa |
1156677 |
T |
|
| Q |
223 |
nnnnnttgcagcctctactctcctataacataacaacataaaatagctaaaacctcacaaaatagtgagttgaattggaggaagggaaggtctgtgtaga |
322 |
Q |
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| T |
1156678 |
aaa--ttgcagcctctactctcctataacataacaacataaaatagctaaaacctcacaaaagagtgagttgaattggaggaagggaaggtctgtgtaga |
1156775 |
T |
|
| Q |
323 |
atagcgagctgattttttcatatatctgaaggtggataagggaatggatgattgggaaatgaagtgtggatgcccatcgatgaatttcttgtattatttt |
422 |
Q |
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|||| ||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1156776 |
atagtgagctgaatttttcatatatctgaaggtggagaagggaatagatgattgggaaatgaagtgtggatgcccatcgatgaatttcttgtattatttt |
1156875 |
T |
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| Q |
423 |
taattaaacattgatgaatttcttg |
447 |
Q |
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| T |
1156876 |
taattaaacattgatgaatttcttg |
1156900 |
T |
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Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 1180652 - 1180851
Alignment:
| Q |
19 |
gcaggtatcataatcatatctatatatcaaagagtgaattgaacnnnnnnnaaaatagccaaaatttattccaatagcaaaaacatcacaagttgagatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1180652 |
gcaggtatcataatcatatctatatatcaaagagtgaattgatttttttttaaaatagccaaaatttattccaatagcaaaaacatcacaagctgagatg |
1180751 |
T |
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| Q |
119 |
ttgtgcttggcaaaagccacaggtacacaggaacagaagaaacacaagcaaggctgaaaaattaacgcctgagccccacactagcaatcacaaaatacat |
218 |
Q |
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| T |
1180752 |
ttgtgcttggcaaaagccacaagtacacaggaacagaagaaacacaggcaaggctgaaaaattaacgcctaagccccacactagcaatcacaaaatacat |
1180851 |
T |
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