View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_11 (Length: 302)
Name: NF4553_low_11
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 1978725 - 1978996
Alignment:
| Q |
18 |
ctcttcaaattcttcttcaagggtttttcgaatatgaatcacccattgaagttcatcaaaggttgatttaga---gtatgacatagtggaccttagagaa |
114 |
Q |
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| T |
1978725 |
ctcttcaaattcttcttcaaggatttttcgaatatgaatcacccattgaagttcatcaaaggttgatttagaattatatgacatagtggaccttagagaa |
1978824 |
T |
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| Q |
115 |
gacatannnnnnnataactcttacaccgaagaaattatattggcaattttgatgaaagatgtatgttttgttcggtacttataatatgcacaattgcact |
214 |
Q |
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| T |
1978825 |
gacata-ttttttataactcttacaccgaagaaattatattggcaat--------aagatgtatgttttgttcggtacttataatatgcacaattgcact |
1978915 |
T |
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| Q |
215 |
agttatgactttgatagatcaatttacaataaacaattaggaatgtgttactcatggttatttcttttagggcatggaggttcattt |
301 |
Q |
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| T |
1978916 |
a------actttgatagatcaatttacaataaacaattaggaatgtgttactcatggttatttcttttagggcatggaggttcattt |
1978996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 1947681 - 1947409
Alignment:
| Q |
18 |
ctcttcaaattcttcttcaagggtttttcgaatatgaatcacccattgaagttcatcaaaggttgatttagagt---atgacatagtggaccttagagaa |
114 |
Q |
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| T |
1947681 |
ctcttcaaattcttcttcaagggtttttctaacatgaatcacccatcgaagttcatcaaaggttgatttagaattatatgacatagtggaccttagagaa |
1947582 |
T |
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| Q |
115 |
gacatannnnnnn--ataactcttacaccgaagaaattatattggcaattttgatgaaagatgtatgttttgttcggtacttataatatgcacaattgca |
212 |
Q |
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| T |
1947581 |
gacatttttttttttataactcttacactgaagaatttatattggcaattttgatgaaagatgtatggtttgttcgttacttataacttgcacaattgca |
1947482 |
T |
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| Q |
213 |
ctagttatgactttgatagatcaatttacaataaacaattaggaatgtgttactcatggttatttcttttagg |
285 |
Q |
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| T |
1947481 |
ctagctatgactttgttagatcaatttacaataaacaattaggaatgtgttactcatggttatttcttttagg |
1947409 |
T |
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