View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_19 (Length: 201)
Name: NF4553_low_19
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 28714890 - 28715065
Alignment:
| Q |
9 |
acatcatcaataccaataaaaaacaaacctccaaaatcaaatcaagacaaatactaataagctaaaccacatgaaagctgtcatcaacatttacggttct |
108 |
Q |
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| T |
28714890 |
acatcatcaacaccgataaaaaacaaacctctaaaatcaaatcaacacgaatactaatgagctaaacaacatgaaagctgtcatcaacatttacggttct |
28714989 |
T |
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| Q |
109 |
tttaatttctcaactggtcatttaatttggtgaaaacaaatatttttacagctgtttactttacgttatactgatgatgtc |
189 |
Q |
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| T |
28714990 |
tttaatttctcaactggtc-----atttggtgaaaacaaatatttttgcagctgtttactttacgttatactgatgatgtc |
28715065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 28709764 - 28709839
Alignment:
| Q |
107 |
cttttaatttctcaactggtcatttaatttggtgaaaacaaatatttttacagctgtttactttacgttatactgatgatg |
187 |
Q |
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| T |
28709764 |
cttttaatttctcaactggtcattt-----ggtgaaaaccaatattttttcagctgtttactgtacgttatattgatgatg |
28709839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 28718459 - 28718534
Alignment:
| Q |
107 |
cttttaatttctcaactggtcatttaatttggtgaaaacaaatatttttacagctgtttactttacgttatactgatgatg |
187 |
Q |
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| T |
28718459 |
cttttaatttctcaactggtcattt-----ggtgaaaaccaatattttttcagctgtttactgtacgttatattgatgatg |
28718534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 28702400 - 28702477
Alignment:
| Q |
92 |
tcaacatttacggttcttttaatttctcaactggtcatttaatttggtgaaaacaa-atatttttacagctgtttacttt |
170 |
Q |
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| T |
28702400 |
tcaacatttatggttcttttaatttcttaactggtcatt--attaggtgaaaccaataatttttttcagctgtttacttt |
28702477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 13587802 - 13587765
Alignment:
| Q |
13 |
catcaataccaataaaaaacaaacctccaaaatcaaat |
50 |
Q |
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| T |
13587802 |
catcaagaccaataaaaaacaaacctccaaaaccaaat |
13587765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 28007012 - 28006968
Alignment:
| Q |
9 |
acatcatcaataccaataaaaaacaaacctccaaaatcaaatcaa |
53 |
Q |
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| T |
28007012 |
acatcataaacaccaataaaaaacaaacctccaaaacaaaatcaa |
28006968 |
T |
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