View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_2 (Length: 493)
Name: NF4553_low_2
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 53636057 - 53636174
Alignment:
| Q |
1 |
tgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgactaagaaggagtatgacatatactaatactactattgaagttacatga |
100 |
Q |
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| T |
53636057 |
tgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgactaagaaggagcatgacatatactaatactactattgaagttacatga |
53636156 |
T |
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| Q |
101 |
attctaattactgtactc |
118 |
Q |
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| T |
53636157 |
attctaattactgtactc |
53636174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 307 - 461
Target Start/End: Original strand, 53636375 - 53636530
Alignment:
| Q |
307 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgtannnnnnnnnnnnnnnnnnctccctaacaattaacattgaat |
406 |
Q |
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| T |
53636375 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgtatttttcttttctttttttctccctaacaattaacattgaat |
53636474 |
T |
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| Q |
407 |
gaaatgcacaaaatgtgatttactc-aaaaataggatgttgtctttgaatttaggc |
461 |
Q |
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| T |
53636475 |
gaaatgcacaaaatgtgatttactcaaaaaataggatgttgtctttgaatttaggc |
53636530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 53636222 - 53636266
Alignment:
| Q |
167 |
tggttaatacaggtgaaggtatatctttcaactctcttgcaagcc |
211 |
Q |
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| T |
53636222 |
tggttaatacaggtgaaggtatatctttcaactctcttgcaagcc |
53636266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48336480 - 48336427
Alignment:
| Q |
1 |
tgaacatggttatttcaggcatcaagaaatgaatgctctatttttatgttgact |
54 |
Q |
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| T |
48336480 |
tgaacatggttatttcatgcatcaagaaatgaatgttctattttcatgttgact |
48336427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 470
Target Start/End: Complemental strand, 48333670 - 48333602
Alignment:
| Q |
400 |
attgaatgaaatgcacaaaatgtgatttactcaaaaataggatgttgtctttgaatttaggcaaagtcttt |
470 |
Q |
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| T |
48333670 |
attgaatgaaatgcacaaaatgtggtttactc--aattaggatgatgtccttggatttaggcaaagtcttt |
48333602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 48335497 - 48335440
Alignment:
| Q |
307 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
365 |
Q |
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| T |
48335497 |
atgtgacactgaaattagta-ataaagcgtcacatcatagtataaggcccatttatgta |
48335440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 48335626 - 48335569
Alignment:
| Q |
307 |
atgtgacactgagattagtatataaagcgtcacatcatagtataaggtccgtttatgta |
365 |
Q |
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| T |
48335626 |
atgtgacactgaaattagta-ataaagcgtcacatcatagtataaggcccatttatgta |
48335569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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