View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_5 (Length: 422)
Name: NF4553_low_5
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1900865 - 1901268
Alignment:
| Q |
1 |
cattaatatgttcgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggat |
100 |
Q |
| |
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|||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1900865 |
cattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggat |
1900964 |
T |
|
| Q |
101 |
gtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttgggtttttcccaccgataactag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1900965 |
gtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccgataactag |
1901064 |
T |
|
| Q |
201 |
cttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcaggagatta |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1901065 |
cttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcaggagatta |
1901164 |
T |
|
| Q |
301 |
aaataaaaagtagttttgctagaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtca |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1901165 |
aaataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtacgtcataccttgagcagttggtca |
1901264 |
T |
|
| Q |
401 |
gcat |
404 |
Q |
| |
|
|||| |
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|
| T |
1901265 |
gcat |
1901268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 1910311 - 1910714
Alignment:
| Q |
1 |
cattaatatgttcgtatgaatagaatctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggat |
100 |
Q |
| |
|
|||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910311 |
cattaagatgtacgtatgaatagactctactcaaatgactctcccttggcaagtggttaatatggggtatagggaatgaaagaaaaactgtgctacggat |
1910410 |
T |
|
| Q |
101 |
gtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttgggtttttcccaccgataactag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1910411 |
gtctgtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcatttaagtggtttggttttttcccaccgataactag |
1910510 |
T |
|
| Q |
201 |
cttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcaggagatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1910511 |
cttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattttttctaccgctttgatttgttgattcaggagatta |
1910610 |
T |
|
| Q |
301 |
aaataaaaagtagttttgctagaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtca |
400 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1910611 |
aaataaaaagtagttttgctaaaataactgttacaaaacccaaaaagaaaacaaacaatggaaacagttactagtacgtcataccttgagcagttggtca |
1910710 |
T |
|
| Q |
401 |
gcat |
404 |
Q |
| |
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|||| |
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|
| T |
1910711 |
gcat |
1910714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 67 - 330
Target Start/End: Original strand, 1894058 - 1894322
Alignment:
| Q |
67 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
166 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
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| T |
1894058 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1894157 |
T |
|
| Q |
167 |
ttaagtggtttgggtttttccc-accgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattt |
265 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
1894158 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1894256 |
T |
|
| Q |
266 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
330 |
Q |
| |
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|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
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| T |
1894257 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1894322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 67 - 330
Target Start/End: Original strand, 1903504 - 1903768
Alignment:
| Q |
67 |
gtatagggaatgaaagaaaaactgtgctacggatgtgggtaatatggggtgccaaagtcccgcgatgagtaatatgtcgatgtgatgctcggtgtagcat |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| ||||||||| ||||| ||||||||||| |||||| || |
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| T |
1903504 |
gtatagggaatgaaagaaaaactgtgctatggatgtggttattatggggtaccaaagtcctacgatgagtagtatgttaatgtgatgctcagtgtagtat |
1903603 |
T |
|
| Q |
167 |
ttaagtggtttgggtttttccc-accgataactagcttttaaaggaagattatttcccaagcgctcaaatgcttgtcaaaatgcaaccttgtatttattt |
265 |
Q |
| |
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||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
1903604 |
ttaagtggtttggttttttccccactgataactagcttttaaaggaagattatttcccaagcgctcaaatgcatgtcaaaatgcaaccttgtattta-tt |
1903702 |
T |
|
| Q |
266 |
tttctaccgctttgatttgttgattcaggaga-ttaaaataaaaagtagttttgctagaataactg |
330 |
Q |
| |
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|||||||| ||||||||| || || | || | |||||||||||||||||| ||||| |||||||| |
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| T |
1903703 |
tttctaccaatttgatttgctgcttaatgaaatttaaaataaaaagtagttatgctaaaataactg |
1903768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 1894363 - 1894424
Alignment:
| Q |
343 |
aaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcagcat |
404 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1894363 |
aaaagaaaacaaacaaaggaaacagttactagtatgtcataccttgagcagttggtcagcat |
1894424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 1903809 - 1903870
Alignment:
| Q |
343 |
aaaagaaaacaaacaatggaaacagttactagtatgtcataccttgagcagttggtcagcat |
404 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1903809 |
aaaagaaaacaaacaaaggaaacagttactagtatgtcataccttgagcagttggtcagcat |
1903870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 1893980 - 1894016
Alignment:
| Q |
18 |
gaatagaatctactcaaatgactctcccttggcaagt |
54 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1893980 |
gaatagactctactcaaatgactctcccttggcaagt |
1894016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 1903426 - 1903462
Alignment:
| Q |
18 |
gaatagaatctactcaaatgactctcccttggcaagt |
54 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
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|
| T |
1903426 |
gaatagactctactcaaatgactctcccttggcaagt |
1903462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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