View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_8 (Length: 384)
Name: NF4553_low_8
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_8 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 5725234 - 5724864
Alignment:
| Q |
15 |
catcaagatttcagttgaaccagaagtgttaagttttaagaaaaatgagaaaaagtcgtacataattacattttcgtcatcaggttcaaaaccaaatagc |
114 |
Q |
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| T |
5725234 |
catcaagatatcagttgaaccagaagtgttaagttttaagaaaaatgagaagaagtcgtacataattacattttcgtcatcaggttcaaaaccaaatagc |
5725135 |
T |
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| Q |
115 |
actcaaagttttggaagtttggaatggtctgacggaaaaactgttgtaaaaagtcctattgtgtttagttggaaattataatgaaatctccaagaatgtt |
214 |
Q |
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| T |
5725134 |
actcaaagttttggaagtttggaatggtctgacggaaaaactgttgtaagaagtcctattgtgtttagttggaaattataatgaaatctccaagaatgtt |
5725035 |
T |
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| Q |
215 |
ttagtgttatgattatataatagatataataaaatatatgtttttata------aagtttcatgaatgatgtttggtaaaatgtttgactttaaatttat |
308 |
Q |
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| T |
5725034 |
ttagtgttatgattatataataaatataataaaatatatgtttttatatatttcaagtttcatgaatgatgtttggtaaaatgtttgactttaaatttat |
5724935 |
T |
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| Q |
309 |
catgcatgaatatgatttttaattcttttgactactttgaattttgttgttttatctaccaatcaaattgt |
379 |
Q |
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| T |
5724934 |
catgcatgaatatgatttttaattcttttgactactttgaattttgttgttttatctaccaatcaaattgt |
5724864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 377
Target Start/End: Original strand, 68661 - 69032
Alignment:
| Q |
15 |
catcaagatttcagttgaaccagaagtgttaagttttaagaaaaatgagaaaaagtcgtacataattacattttcgtcatcaggttcaaaaccaaatagc |
114 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| |
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| T |
68661 |
catcaagatatcagttgaaccagaagtgttaagttttaagaaaaatgagaaaaagttgtacacaatttcattttcgtcagcaggttcaaaaccaaatagc |
68760 |
T |
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| Q |
115 |
actcaaagttttggaagtttggaatggtctgacggaaaaactgttgtaaaaagtcctattgtgtttagttggaaattataatgaaatctccaagaatgtt |
214 |
Q |
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| T |
68761 |
actcaaagttttggaagtgtggaatggtcaaacggaaaaactattgtaagaagtcctattgcctttagttggaaattataatgaaatctccaataatgtt |
68860 |
T |
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| Q |
215 |
ttagtgttatgattatataatagatataataaaa---tatatgtttttata------aagtttcatgaatgatgtttggtaaaatgtttgactttaaatt |
305 |
Q |
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| T |
68861 |
ttag-gttatgattatacaataaatataataaaatagtatatgtttttatatatttcgagtttaatgaatgatgtttggtaaaatgtttgactttaaatt |
68959 |
T |
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| Q |
306 |
tatcatgcatgaatatgatttttaattcttttgactactttgaa--ttttgttgttttatctaccaatcaaatt |
377 |
Q |
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| T |
68960 |
tatcatgcatgaatatgcattttaa-tcctttgactactttaaattttttgttgctttatctaccaatcgaatt |
69032 |
T |
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