View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4553_low_9 (Length: 364)
Name: NF4553_low_9
Description: NF4553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4553_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 44640629 - 44640901
Alignment:
| Q |
1 |
caaacataatttataataaaataatatgatgtaatttgattcatgtagtcgattttacgtataggataaaatttggttgtaattgtagtaataatttaac |
100 |
Q |
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| T |
44640629 |
caaacatagtttataataaaataacatgatgtaatttgattcatgtagccgatttcatttatacgataaaacttggttgttgttgtagtaataatttaac |
44640728 |
T |
|
| Q |
101 |
tcaaatatgactaaggaaatattaagtgtgttgagcgatcttcactctaaatctaacgttatacaaaaggaattaaaaatgtcgccgttgcaatttgttg |
200 |
Q |
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|||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44640729 |
tcaaatatgattaaggaa-tattaagtgtgttgagcaaccttcactctaaatctaatgttatacaaaaggaattaaaaatgtcgccgttgcaatttgttg |
44640827 |
T |
|
| Q |
201 |
tagttagagtttgaactttaaatttctcaattattcaatttaagattgaatttctagctagtaatcaatttgac |
274 |
Q |
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||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44640828 |
tagttggagtttaaacttcaaatttctcaattattcaatttaagactgaatttctagctagtaatcaatttgac |
44640901 |
T |
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