View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4554-Insertion-1 (Length: 671)

Name: NF4554-Insertion-1
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4554-Insertion-1
NF4554-Insertion-1
[»] chr7 (1 HSPs)
chr7 (8-671)||(28271951-28272614)


Alignment Details
Target: chr7 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 8 - 671
Target Start/End: Original strand, 28271951 - 28272614
Alignment:
Q  8 catgaactatctctaattcaggtaagtattgtaacatcggtannnnnnngctacagatcaatatacttatgtcttggtgattcaataaactcctgtttca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28271951 catgaactatctctaattcaggtaagtattgtaacatcggtatttttttgctacagatcaatatacttatgtcttggtgattcaataaactcctgtttca 28272050  T
Q  108 gaacataaattctatatgctcgaatggatgcagaattgcaaagtgcatgaaagagtattttgtttataaaaagaatttcaaaggagctgtgaattcagcc 207  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28272051 ggacataaattctatatgctcgaatggatgcagaattgcaaagtgcatgaaagagtattttgtttataaaaagaatttcaaaggagctgtgaattcagcc 28272150  T
Q  208 cttctagccaaatcatttaatcagaaactttgggatgatagtccataccttttaaaacagttgcctggcattgggatgatcacagcaaaggtgatattaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28272151 cttctagccaaatcatttaatcagaaactttgggatgatagtccataccttttaaaacagttgcctggcattgggatgatcacagcaaaggtgatattaa 28272250  T
Q  308 tagattttatttattttattaattcatataataattgctaatactttatgcaccatatcattttattggtcgatgttcttttcaggcactgcattcaatg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28272251 tagattttatttattttattaattcatataataattgctaatactttatgcaccatatcattttattggtcgatgttcttttcaggcactgcattcaatg 28272350  T
Q  408 ggagttaaatcatttgaagcactcgctgaagctgatccgaggaaaatagagctagtgactggtcgaaaatacccatttggcaaccatattaaggattctc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28272351 ggagttaaatcatttgaagcactcgctgaagctgatccgaggaaaatagagctagtgactggtcgaaaatacccatttggcaaccatattaaggattctc 28272450  T
Q  508 tcttgtctctacctccaaaagttgatgtaaagcttacagaaatcgaaagccatacgcatggaaagtccaagcttgtagtaacattgactaggatatcaca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28272451 tcttgtctctacctccaaaagttgatgtaaagcttacagaaatggaaagccatacacatggaaagtccaagcttgtagtaacattgactaggatatcaca 28272550  T
Q  608 gtcagggcagtcagcaaaacgacattatgctgatatggtgtgttatctgaatgttttcttagaa 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28272551 gtcagggcagtcagcaaaacgacattatgctgatatggtgtgttatctgaatgttttcttagaa 28272614  T

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