View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4554-Insertion-3 (Length: 580)
Name: NF4554-Insertion-3
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554-Insertion-3 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 7 - 580
Target Start/End: Original strand, 20749532 - 20750105
Alignment:
| Q |
7 |
agaatcagtcgctgattttgaattctctgcagtcacaccattaccgatatgaactgtcaaatcaagattgaaccgcttatgttcgatatcgcattttgaa |
106 |
Q |
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| T |
20749532 |
agaatcagtcgctgattttgaattctctgcagtcacaccattaccgatatgaactgtcaaatcaagattgaacagcttatgttcgatctcgcattttgaa |
20749631 |
T |
|
| Q |
107 |
cacaattcatcgaatttggattacaatacgtccgattttgatccaagaacgaatgtaatcaagcataaatcacttttccttgaggaagtctaactctata |
206 |
Q |
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| T |
20749632 |
cacaatttatcgaatttggattacaatacgtccgattttgatccaagaacgaatgtaattaagcataaatcacttttccttgaggaagtctaactctata |
20749731 |
T |
|
| Q |
207 |
aacatgttcttcaccagtacatttatcaaccttcacaatccaacgacttcgagggctgttactgattccagattcaaatttaggactaatagcattattc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20749732 |
aacatgttcttcaccagtacatttatcaaccttcacaatccaacgacttcgagggctgttactgattccagattcaaatttaggactaatagcattattc |
20749831 |
T |
|
| Q |
307 |
tctccaaatcttgtcaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcattgtaac |
406 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20749832 |
tctccaaatcttgttaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcattgtaac |
20749931 |
T |
|
| Q |
407 |
caacaacaactgcacccttttgtttataacaaccaatttgaacacatttaacaatctcttcatgattcataaggttgcaatcaattaacacaaaatcagc |
506 |
Q |
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| T |
20749932 |
caacaacaactgtacctttttgtttacaacaaccaatttgaacacatttaacaatctcttcatgatttataaggttgcaatcaattaacacaaaatcagc |
20750031 |
T |
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| Q |
507 |
tttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaacttgattagaagccgctcctagga |
580 |
Q |
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| T |
20750032 |
tttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaacttgattagaagccgctcctagga |
20750105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 157 - 580
Target Start/End: Original strand, 20761694 - 20762111
Alignment:
| Q |
157 |
gaatgtaatcaagcataaatcacttttccttgaggaagtctaactctataaacatgttcttcaccagtacatttatcaaccttcacaatccaacgacttc |
256 |
Q |
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| T |
20761694 |
gaatgtaatcaagcataaatcacttttccttggggaagtctaactctataaacatgttcttcaccagtacatttatcaaccttcacaatccaacgacttc |
20761793 |
T |
|
| Q |
257 |
gagggctgttactgattccagattcaaatttaggactaatagcattattctctccaaatcttgtcaccaacaacccttgtccaataggaagcaattgagt |
356 |
Q |
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| T |
20761794 |
gagggctgttactcattccagattcaaatttaggactaatagcattattctctccaaatcttgttaccaacaacccttgtccaataggaagcaattgagt |
20761893 |
T |
|
| Q |
357 |
ttttgatccacaagatctccatgaccctttagaactaaatgcattgtaaccaacaacaactgcacccttttgtttataacaaccaatttgaacacattta |
456 |
Q |
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| T |
20761894 |
ttttgatccacaagatctccatgaccctttagaactaaatgcattgtaaccaacaacaactgtacctttttgtttacaacaaccaatttgaacacattta |
20761993 |
T |
|
| Q |
457 |
acaatctcttcatgattcataaggttgcaatcaattaacacaaaatcagctttgtttaacaccaataattcttgtgctccttttccaatcatgaattgaa |
556 |
Q |
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| T |
20761994 |
acaatctcttcatgattcatatggttgcaatcaattaacacaaaatcagctttgtttaacaccaataa------tgcttcttttccaatcatgaattgga |
20762087 |
T |
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| Q |
557 |
cttgattagaagccgctcctagga |
580 |
Q |
| |
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||||||||||||| |||||||||| |
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| T |
20762088 |
cttgattagaagctgctcctagga |
20762111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 20761526 - 20761580
Alignment:
| Q |
30 |
tctctgcagtcacaccattaccgatatgaactgtcaaatcaagattgaaccgctt |
84 |
Q |
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| T |
20761526 |
tctctgcagtcacgccattgccgatatgaactgtcaaatcaagattgatccgctt |
20761580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 34283008 - 34282931
Alignment:
| Q |
178 |
acttttccttgaggaagtctaactctataaacatgttcttcaccagtacatttatcaaccttcacaatccaacgactt |
255 |
Q |
| |
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||||| || ||||||| |||||| ||| | |||||||| |||||||| |||||||||||||| |||| |||||||||| |
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| T |
34283008 |
actttcccgtgaggaaatctaaccctaaacacatgttcctcaccagtgcatttatcaaccttaacaacccaacgactt |
34282931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 309 - 414
Target Start/End: Complemental strand, 34282874 - 34282769
Alignment:
| Q |
309 |
tccaaatcttgtcaccaacaacccttgtccaataggaagcaattgagtttttgatccacaagatctccatgaccctttagaactaaatgcattgtaacca |
408 |
Q |
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| T |
34282874 |
tccaaatcttgtcaccaaaagcccttctccaattggcaaaagttgagtctttgatccacatgataaccaagaccctttgcaactaaatccattgtacccc |
34282775 |
T |
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| Q |
409 |
acaaca |
414 |
Q |
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|||||| |
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| T |
34282774 |
acaaca |
34282769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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