View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4554-Insertion-5 (Length: 353)

Name: NF4554-Insertion-5
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4554-Insertion-5
NF4554-Insertion-5
[»] chr8 (4 HSPs)
chr8 (8-351)||(30141929-30142273)
chr8 (270-335)||(19452614-19452679)
chr8 (270-335)||(19528397-19528462)
chr8 (270-335)||(13217951-13218016)
[»] chr7 (2 HSPs)
chr7 (270-335)||(2476747-2476812)
chr7 (270-335)||(26572776-26572841)
[»] chr4 (3 HSPs)
chr4 (270-335)||(10179321-10179385)
chr4 (270-326)||(30500460-30500516)
chr4 (270-335)||(50688515-50688580)
[»] chr1 (2 HSPs)
chr1 (270-335)||(1972148-1972213)
chr1 (270-324)||(26099920-26099974)
[»] chr2 (1 HSPs)
chr2 (270-352)||(17558392-17558474)
[»] chr6 (1 HSPs)
chr6 (195-233)||(20712075-20712112)
[»] chr5 (2 HSPs)
chr5 (195-233)||(26627338-26627376)
chr5 (195-231)||(25028386-25028422)
[»] chr3 (1 HSPs)
chr3 (194-227)||(49886806-49886839)


Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 30141929 - 30142273
Alignment:
Q  8 aaaccaaccttgatccaatcagaattcaaccccaatgcccacattttttaaaaataaattaatcttaccagcttctattttattttataacattagttct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30141929 aaaccaaccttgatccaatcagaattcaaccccaatgcccacattttttaaaaataaattaatcttaccagcttctattttattttataacattagttct 30142028  T
Q  108 aacaataaagatttcttgnnnnnnnagtaaattaagatctctagttgacactacaagttctccatcaagaatataaaaagaattgatatatttgtac-aa 206  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||| ||    
T  30142029 aacaataaagatttcttgtttttttagtaaattaagatctctagttgacactgcaagttctccatcaaaaatataaaaagaattgatatatttatactaa 30142128  T
Q  207 ctatttttaagcaacttttagacaactctcttcttctttattttaacattacataaaatatatgatgagcatgagtgctagttcctcgtgaattagagtt 306  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  30142129 ctatttttaaacaacttttagacaattctcttcttctttattttaacattacataaaatatatgatgagcatgggtgctagttcctcgtgaattagagtt 30142228  T
Q  307 aggactactttgctgatgcttcaagctcatccattttcttgttgg 351  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  30142229 agaactactttgctgatgcttcaagctcatccattttcttgttgg 30142273  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 19452679 - 19452614
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    ||||||||||||||| ||||| | |||| |||||||||||| |||||   ||||||||||||||||    
T  19452679 gatgagcatgagtgcgagttcttagtgatttagagttaggattacttgagtgatgcttcaagctca 19452614  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 19528397 - 19528462
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    ||||||||||||||| ||||| | |||| |||||||||||| |||||   ||||||||||||||||    
T  19528397 gatgagcatgagtgcgagttcttagtgatttagagttaggattacttgagtgatgcttcaagctca 19528462  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 13218016 - 13217951
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    |||||||||| ||||||| |||| |||| |||||||||||| |||||   ||||||||||| ||||    
T  13218016 gatgagcatgtgtgctagctcctagtgatttagagttaggattacttaagtgatgcttcaatctca 13217951  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 2476812 - 2476747
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    ||||||||||||||||||||| | |||| ||||||| |||| ||||| | ||||||||||||||||    
T  2476812 gatgagcatgagtgctagttcttagtgatttagagtcaggattacttgggtgatgcttcaagctca 2476747  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 26572841 - 26572776
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    |||||||||||||| |||||| | |||| ||||||||| || || || | ||||||||||||||||    
T  26572841 gatgagcatgagtgttagttcttagtgatttagagttaagattatttgggtgatgcttcaagctca 26572776  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 10179321 - 10179385
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    ||||||||||||||||||||| | ||||||||||||||||| ||| ||| ||||||||| ||||||    
T  10179321 gatgagcatgagtgctagttcttagtgaattagagttaggattac-ttgatgatgcttctagctca 10179385  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 326
Target Start/End: Original strand, 30500460 - 30500516
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgct 326  Q
    ||||||||||||||||||||| | |||||||||| |||||| ||||||| |||||||    
T  30500460 gatgagcatgagtgctagttcttagtgaattagatttaggattactttggtgatgct 30500516  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 50688515 - 50688580
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    |||||||||||||||| |||| | |||| ||||||||| || ||||||| |||| |||||||||||    
T  50688515 gatgagcatgagtgctcgttcttagtgatttagagttatgattactttggtgatacttcaagctca 50688580  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 335
Target Start/End: Original strand, 1972148 - 1972213
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctca 335  Q
    ||||||||||||||||||||| | |  || ||||||||||| ||||||| ||||||||||||||||    
T  1972148 gatgagcatgagtgctagttcttagataactagagttaggattactttggtgatgcttcaagctca 1972213  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 26099920 - 26099974
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatg 324  Q
    ||||||||||||||||||||| | ||||||||||||||  | ||||||| |||||    
T  26099920 gatgagcatgagtgctagttcttagtgaattagagttataattactttggtgatg 26099974  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 17558474 - 17558392
Alignment:
Q  270 gatgagcatgagtgctagttcctcgtgaattagagttaggactactttgctgatgcttcaagctcatccattttcttgttgga 352  Q
    ||||||||||||||||||||| | |||| ||  |||||||| ||||| | ||||||||||| |||| |  |||||||||||||    
T  17558474 gatgagcatgagtgctagttcttagtgattttaagttaggattacttaggtgatgcttcaaactcacctcttttcttgttgga 17558392  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 20712075 - 20712112
Alignment:
Q  195 atatttgtacaactatttttaagcaacttttagacaact 233  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  20712075 atatttgtacaactatttttaa-caacttttagacaact 20712112  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 26627338 - 26627376
Alignment:
Q  195 atatttgtacaactatttttaagcaacttttagacaact 233  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  26627338 atatttgtacaactattttttatcaacttttagacaact 26627376  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 25028422 - 25028386
Alignment:
Q  195 atatttgtacaactatttttaagcaacttttagacaa 231  Q
    ||||||||||||||||||| || ||||||||||||||    
T  25028422 atatttgtacaactattttaaaacaacttttagacaa 25028386  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 49886839 - 49886806
Alignment:
Q  194 tatatttgtacaactatttttaagcaacttttag 227  Q
    ||||||||||||||||||||||| ||||||||||    
T  49886839 tatatttgtacaactatttttaaacaacttttag 49886806  T

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