View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4554-Insertion-9 (Length: 76)
Name: NF4554-Insertion-9
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 43256617 - 43256687
Alignment:
| Q |
5 |
acaaaacatctaccatacaaagttaccacaagtaatatnnnnnnnntatattggtactcaaacaagtgttat |
76 |
Q |
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| T |
43256617 |
acaaaacatctaccatacaaagttaccacaagtaatat-aaaaaaatatattgttactcaaacaagtgttat |
43256687 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 43260206 - 43260243
Alignment:
| Q |
5 |
acaaaacatctaccatacaaagttaccacaagtaatat |
42 |
Q |
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||||||||||||||| ||| |||||||||||||||||| |
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| T |
43260206 |
acaaaacatctaccagacatagttaccacaagtaatat |
43260243 |
T |
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