View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4554_high_2 (Length: 428)
Name: NF4554_high_2
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 3715616 - 3715252
Alignment:
| Q |
17 |
atgaaaggtggaggagggg--aggttgtggtccaaatagtggagccaacaaacccgtgcactgcaatctttctagggacgaataatgtgggttgctacta |
114 |
Q |
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| T |
3715616 |
atgaaaggtagaggaggggggaggttgtggtccaaatagtggagccaacaaacccgtgcactgcaatctttccagggacgaataatgtgggttgctacta |
3715517 |
T |
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| Q |
115 |
ctacaatatctgattcttcaattattttctgtcacattttctccagctccagctttatcatctatcatcctatcctatcgatatattcagcnnnnnnnta |
214 |
Q |
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| T |
3715516 |
ttacaatatttgattcttcaattattttctgtcacattttctccagctccagctttatcatctatcatcctatcctatcgatatattcagcaaaaaaata |
3715417 |
T |
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| Q |
215 |
tttctatacaaatttttaaacttaaatttgaaattgtgtattagctagatagtgactttatattaaacttttaagtaaaaatatctaaaaacaaattgtt |
314 |
Q |
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| T |
3715416 |
tttctatacaaatttttaaacttaaatttgaaattgtgtattagctaaataatgactttatattaaac-tttaagtaaaaatatctaaaaacaaattgtt |
3715318 |
T |
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| Q |
315 |
ttgctcaatggtaaattcaattcattaagaattacaattatcaaaggcactcaaagacaatttgtt |
380 |
Q |
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| T |
3715317 |
ttgctcaatagtaaattcaattcattaagaattacaattatcaaaggcacccaaagacaatttgtt |
3715252 |
T |
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