View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4554_high_8 (Length: 237)
Name: NF4554_high_8
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39395897 - 39395680
Alignment:
| Q |
1 |
attagattcaattcttctctaaagcaaccaacattttgaatctcaggttaacttgatgaagaagataaatgattatacgaatgaatagcgcggttgacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39395897 |
attagattcaattcttctctaaagcaaccaacattttgaatctcaggttaacttgatgaagaagatacatgattatacgaatgaatagcgcggttgacaa |
39395798 |
T |
|
| Q |
101 |
agaagaaggaaataaaaccaacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctgatactgggaagtcta |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39395797 |
agaag---gaaataaaaccaacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctgatactgggaagtcta |
39395701 |
T |
|
| Q |
201 |
acaagcttaggaggttgagac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39395700 |
acaagcttaggaggttgagac |
39395680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 44519727 - 44519810
Alignment:
| Q |
120 |
aacctggagagaagggaaacaagttcgttacggtgagcggagagggtaccttccactctgtctctgatactgggaagtctaaca |
203 |
Q |
| |
|
||||||||||| || |||| ||||||||||||||||| || || ||| ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
44519727 |
aacctggagaggagagaaatgagttcgttacggtgagcagaaagagtatcttgaactctgtctctgatactgggaactctaaca |
44519810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University