View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4554_low_1 (Length: 470)
Name: NF4554_low_1
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 60 - 463
Target Start/End: Original strand, 27801300 - 27801704
Alignment:
| Q |
60 |
gctttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27801300 |
gctttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctc |
27801399 |
T |
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| Q |
160 |
tccaaattattcttggctttagtggccttttggcactatgtagttgggttttcaaatctgtccggttttaccattttttccaatagaaaataattttaca |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27801400 |
tccaaattattcttggctttagtggccttttggcactatgtagttgggttttcaaatctgtccgattttaccattttttccaatagaaaataattttaca |
27801499 |
T |
|
| Q |
260 |
ccaacgttgcattacacgcttttacactccatagtttttaatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttcttgaatcg |
359 |
Q |
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| T |
27801500 |
ccaacgttgcattacacgcttttacactccatagtttttaatcacttttctattttgtgcagtgagatgatgagtccattgacaagctgttcttgaatcg |
27801599 |
T |
|
| Q |
360 |
ccaacttaccctatgtgctactggtactatattcagacgtgacaatgaagccgttcc-tcagctggtgagaagtttcttctcctcattccttggaatatc |
458 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27801600 |
ccaacttaccctatgtgctactggtactatattcagacgtgacaatgaagccgttccttcagctggtgagaagtttcttctcctcattccttggaatatc |
27801699 |
T |
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| Q |
459 |
ctatg |
463 |
Q |
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||||| |
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| T |
27801700 |
ctatg |
27801704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 453
Target Start/End: Original strand, 27770799 - 27770861
Alignment:
| Q |
391 |
ttcagacgtgacaatgaagccgttcctcagctggtgagaagtttcttctcctcattccttgga |
453 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||| |||| | |||||||||||| |
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| T |
27770799 |
ttcagacataacaatgaatccgttgctcagctggtgagaagttgcttcacatcattccttgga |
27770861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 26474961 - 26474834
Alignment:
| Q |
62 |
tttctgttaagtaatcattattgttcaattgacaaatatgcagagatttgggataataatgaggggattacaggatgcccttatagtttcttcatctctc |
161 |
Q |
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||||| ||| ||||||||| |||| |||||||||||||||||| ||||| || |||||||||||| ||||| ||||||||||||| ||||| | || |
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| T |
26474961 |
tttctattatgtaatcattgttgtctaattgacaaatatgcagaaatttgagaagataatgaggggaacacagggtgcccttatagttgcttcaacactt |
26474862 |
T |
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| Q |
162 |
caaattattcttggctttagtggccttt |
189 |
Q |
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|||||| |||||||||||||||| |||| |
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| T |
26474861 |
caaattgttcttggctttagtggacttt |
26474834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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