View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4554_low_11 (Length: 229)

Name: NF4554_low_11
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4554_low_11
NF4554_low_11
[»] chr8 (7 HSPs)
chr8 (79-196)||(11758156-11758274)
chr8 (51-143)||(33581806-33581898)
chr8 (60-143)||(8052-8135)
chr8 (52-133)||(18651670-18651751)
chr8 (58-143)||(10545783-10545868)
chr8 (1-50)||(11758319-11758368)
chr8 (52-100)||(43846273-43846321)
[»] scaffold0325 (1 HSPs)
scaffold0325 (51-143)||(14675-14767)
[»] chr7 (6 HSPs)
chr7 (55-143)||(47588070-47588158)
chr7 (78-129)||(33607905-33607956)
chr7 (58-143)||(46866120-46866205)
chr7 (58-108)||(33607957-33608007)
chr7 (79-109)||(35720293-35720323)
chr7 (80-128)||(16862791-16862839)
[»] chr1 (3 HSPs)
chr1 (58-106)||(22677810-22677858)
chr1 (45-97)||(34001463-34001515)
chr1 (105-143)||(22677878-22677916)
[»] chr6 (2 HSPs)
chr6 (80-143)||(7526581-7526644)
chr6 (52-102)||(7526597-7526649)
[»] chr5 (1 HSPs)
chr5 (68-108)||(32303647-32303687)
[»] chr2 (3 HSPs)
chr2 (52-108)||(13387340-13387396)
chr2 (80-109)||(34233612-34233641)
chr2 (81-129)||(44540743-44540791)
[»] chr4 (1 HSPs)
chr4 (52-96)||(16962841-16962885)
[»] chr3 (1 HSPs)
chr3 (79-135)||(17505352-17505408)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 11758274 - 11758156
Alignment:
Q  79 agcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag-aagtttctttttaatatggatctagactataatg 177  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| || || || |||||||||||||||||||||||| ||||||    
T  11758274 agcgtgagttaactcacgcataagtattttgtgttgggaatgaacaaaaaatgttgtgagaatagcaattttctttttaatatggatctagaccataatg 11758175  T
Q  178 tgcgtttaaatgaagaata 196  Q
    |||||||||||||||||||    
T  11758174 tgcgtttaaatgaagaata 11758156  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 33581898 - 33581806
Alignment:
Q  51 attttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| |||||    
T  33581898 attttgctcattcccaacaaaatagcctagcgtgagttaactcacgcaggagtattttttgttgtgaatgagcaaaaattgttgtgagaagag 33581806  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 8135 - 8052
Alignment:
Q  60 attcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    |||| ||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  8135 attcacaacaaaatagcctagcgtaagttaactgacgcataagtattttgtgttgggaatgagcataaaatgttgtgagaagag 8052  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 18651751 - 18651670
Alignment:
Q  52 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgtt 133  Q
    ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||| |||||| ||||    
T  18651751 ttttgctcattcccaacaaaatagtctaacgtgagttaactcacacatgagtattttgtgttgaaaatgaccaaaaattgtt 18651670  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 10545783 - 10545868
Alignment:
Q  58 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    ||||| ||||||||||||| ||  || |||||||| |||||||||||||||||||||| ||||| |||||| |||| ||| |||||    
T  10545783 tcatttccaacaaaatagtataatgtaagttaacttacgcatgagtattttgtgttggaaatgaacaaaaattgttatgagaagag 10545868  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 11758368 - 11758319
Alignment:
Q  1 tgaactcattttcatttttaatagggtatggctcttctcaattttatttt 50  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||| ||||    
T  11758368 tgaactcattttcatttttaatagggtacagctcttcccaattttttttt 11758319  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 43846273 - 43846321
Alignment:
Q  52 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatg 100  Q
    ||||||||| ||||   ||||||||| ||||||||||||||||||||||    
T  43846273 ttttgttcactcccgttaaaatagtcgagcgtgagttaactcacgcatg 43846321  T

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Target: scaffold0325 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 14675 - 14767
Alignment:
Q  51 attttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  14675 attttgctcattcccaacaaaatagcctagcgtgagttaactcacgcaggagtattttgtgttgggaatgagcaaaaattgttgtgagaagag 14767  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 47588158 - 47588070
Alignment:
Q  55 tgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  47588158 tgttcattcccaataaaatagtttagcgtgagttaactcacgtatgagtattttgtgtcgggaatgtgcaaaaaatgttgtgagaagag 47588070  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 33607956 - 33607905
Alignment:
Q  78 tagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaa 129  Q
    |||||| |||||||||||||||||||||||||||||| |||| || ||||||    
T  33607956 tagcgtcagttaactcacgcatgagtattttgtgttgcgaataagaaaaaaa 33607905  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 46866120 - 46866205
Alignment:
Q  58 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    |||||||||||||||||   |||||| |||||||||| |||  |||||||||||| || |||||| |||||||  ||||| |||||    
T  46866120 tcattcccaacaaaataacttagcgtaagttaactcatgcagaagtattttgtgtaggaaatgagaaaaaaatactgtgagaagag 46866205  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Complemental strand, 33608007 - 33607957
Alignment:
Q  58 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtatttt 108  Q
    |||||||||||||||||| ||||| |||||||||| |||||  ||||||||    
T  33608007 tcattcccaacaaaatagcctagcatgagttaacttacgcaaaagtatttt 33607957  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 109
Target Start/End: Original strand, 35720293 - 35720323
Alignment:
Q  79 agcgtgagttaactcacgcatgagtattttg 109  Q
    |||||||||||||||||||||||||||||||    
T  35720293 agcgtgagttaactcacgcatgagtattttg 35720323  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 16862791 - 16862839
Alignment:
Q  80 gcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaa 128  Q
    ||||||||||||||||||| | ||||||  || ||||||||||||||||    
T  16862791 gcgtgagttaactcacgcaggtgtatttcttgatgggaatgagcaaaaa 16862839  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 22677810 - 22677858
Alignment:
Q  58 tcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtatt 106  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  22677810 tcattcccaacaaaatagcctagcgcgagttaactcacgcaagagtatt 22677858  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 34001515 - 34001463
Alignment:
Q  45 tattttattttgttcattcccaacaaaatagtctagcgtgagttaactcacgc 97  Q
    |||||| ||||||||||||| ||||||||||| || ||||||||| |||||||    
T  34001515 tatttttttttgttcattcctaacaaaatagtgtaacgtgagttacctcacgc 34001463  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 22677878 - 22677916
Alignment:
Q  105 ttttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  22677878 ttttgtgttgggaatgagcaaaaattgttgtgagaagag 22677916  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 143
Target Start/End: Complemental strand, 7526644 - 7526581
Alignment:
Q  80 gcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgtgaaaagag 143  Q
    ||||||||||||||| ||  |  |||||||||||||||||||||||||||| |||||| |||||    
T  7526644 gcgtgagttaactcatgctaggctattttgtgttgggaatgagcaaaaaatattgtgagaagag 7526581  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 7526597 - 7526649
Alignment:
Q  52 ttttgttcattcccaaca--aaatagtctagcgtgagttaactcacgcatgag 102  Q
    ||||| ||||||||||||  |||||| ||||| ||||||||||||||||||||    
T  7526597 ttttgctcattcccaacacaaaatagcctagcatgagttaactcacgcatgag 7526649  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 108
Target Start/End: Original strand, 32303647 - 32303687
Alignment:
Q  68 caaaatagtctagcgtgagttaactcacgcatgagtatttt 108  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  32303647 caaaatagtcgagcgtgagttaactcacgcatgtgtatttt 32303687  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 13387340 - 13387396
Alignment:
Q  52 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacgcatgagtatttt 108  Q
    |||| |||||||||  |||||||||| |||||||||||||||||| ||| |||||||    
T  13387340 ttttcttcattcccgtcaaaatagtcaagcgtgagttaactcacgtatgtgtatttt 13387396  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 34233612 - 34233641
Alignment:
Q  80 gcgtgagttaactcacgcatgagtattttg 109  Q
    ||||||||||||||||||||||||||||||    
T  34233612 gcgtgagttaactcacgcatgagtattttg 34233641  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 44540743 - 44540791
Alignment:
Q  81 cgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaa 129  Q
    |||||||||||||||||||| ||||||  ||  ||||||||||||||||    
T  44540743 cgtgagttaactcacgcatgtgtatttcttggcgggaatgagcaaaaaa 44540791  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 16962841 - 16962885
Alignment:
Q  52 ttttgttcattcccaacaaaatagtctagcgtgagttaactcacg 96  Q
    |||| |||||||| | |||||||||| ||||||||||||||||||    
T  16962841 ttttattcattcctatcaaaatagtcgagcgtgagttaactcacg 16962885  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 17505408 - 17505352
Alignment:
Q  79 agcgtgagttaactcacgcatgagtattttgtgttgggaatgagcaaaaaatgttgt 135  Q
    ||||| ||||||||||||||  |||||||  |||| ||||||| |||||||||||||    
T  17505408 agcgtaagttaactcacgcagaagtatttgttgtttggaatgaacaaaaaatgttgt 17505352  T

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