View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4554_low_13 (Length: 213)

Name: NF4554_low_13
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4554_low_13
NF4554_low_13
[»] chr5 (10 HSPs)
chr5 (73-199)||(32485608-32485734)
chr5 (130-177)||(3899920-3899967)
chr5 (130-177)||(16971225-16971272)
chr5 (130-176)||(30117838-30117884)
chr5 (130-177)||(2953271-2953318)
chr5 (130-176)||(291179-291225)
chr5 (139-177)||(19655239-19655277)
chr5 (18-51)||(32485730-32485763)
chr5 (139-175)||(12913822-12913858)
chr5 (130-178)||(13312274-13312322)
[»] chr8 (8 HSPs)
chr8 (130-177)||(5033242-5033289)
chr8 (130-177)||(35440979-35441026)
chr8 (130-177)||(43844550-43844597)
chr8 (130-176)||(10086839-10086885)
chr8 (130-177)||(5033171-5033218)
chr8 (130-177)||(5667107-5667154)
chr8 (130-177)||(5667178-5667225)
chr8 (130-177)||(33841601-33841648)
[»] chr4 (6 HSPs)
chr4 (130-177)||(23444279-23444326)
chr4 (130-177)||(47661923-47661970)
chr4 (117-177)||(35682247-35682307)
chr4 (130-177)||(42375091-42375138)
chr4 (130-177)||(51265526-51265573)
chr4 (139-175)||(44380013-44380049)
[»] chr1 (15 HSPs)
chr1 (130-177)||(5995450-5995497)
chr1 (130-177)||(37155056-37155103)
chr1 (130-177)||(48993927-48993974)
chr1 (139-177)||(21630061-21630099)
chr1 (139-177)||(28395656-28395694)
chr1 (139-177)||(29371449-29371487)
chr1 (137-177)||(32540829-32540869)
chr1 (130-177)||(5995379-5995426)
chr1 (130-177)||(9157320-9157367)
chr1 (130-177)||(17127574-17127621)
chr1 (130-177)||(29179607-29179654)
chr1 (130-177)||(33219654-33219701)
chr1 (130-177)||(48993998-48994045)
chr1 (130-175)||(36290490-36290535)
chr1 (139-176)||(46932064-46932101)
[»] chr7 (6 HSPs)
chr7 (130-176)||(11016951-11016997)
chr7 (139-177)||(15027623-15027661)
chr7 (130-177)||(41018309-41018356)
chr7 (130-176)||(48000819-48000865)
chr7 (139-176)||(22764782-22764819)
chr7 (139-175)||(4290628-4290664)
[»] chr2 (3 HSPs)
chr2 (137-177)||(6721968-6722008)
chr2 (130-177)||(16514505-16514552)
chr2 (130-175)||(14892343-14892388)
[»] scaffold0016 (1 HSPs)
scaffold0016 (130-177)||(49713-49760)
[»] chr3 (4 HSPs)
chr3 (130-177)||(30734412-30734459)
chr3 (130-177)||(45103119-45103166)
chr3 (139-177)||(47492066-47492104)
chr3 (139-175)||(30580775-30580811)
[»] scaffold0586 (1 HSPs)
scaffold0586 (139-177)||(7128-7166)
[»] chr6 (2 HSPs)
chr6 (130-176)||(7384498-7384544)
chr6 (135-176)||(17750917-17750958)
[»] scaffold0001 (1 HSPs)
scaffold0001 (135-167)||(507731-507763)


Alignment Details
Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 32485734 - 32485608
Alignment:
Q  73 agttaccaaagaaaatatactaacatcccacttacacggatatcacttatgtaccacagagtttgatgacattggtgaaattgaccaatcacaatgtcac 172  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| ||||| |||  ||||||||| | |||||||||||| ||||| |||||||||| ||||    
T  32485734 agttaccaaagcaaatatactgacatcccacttacatggataacacttgtgtgacacagagttgggtgacattggtgacattgatcaatcacaatatcac 32485635  T
Q  173 aatgcaataagtttgtccttatatatg 199  Q
    |||||||||||||||||||||||||||    
T  32485634 aatgcaataagtttgtccttatatatg 32485608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 3899967 - 3899920
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  3899967 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 3899920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 16971272 - 16971225
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  16971272 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 16971225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 30117838 - 30117884
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||| | |||||||||||| |||||||||||||||||||||||||    
T  30117838 agagttgggtgacattggtgatattgaccaatcacaatgtcacaatg 30117884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 2953318 - 2953271
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| |||| |||||||||||||||||||||    
T  2953318 agagttgggtgacattggtgacattggccaatcacaatgtcacaatgc 2953271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 291225 - 291179
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||| | |||||||||||| ||||| |||||||||||||||||||    
T  291225 agagttgggtgacattggtgacattgatcaatcacaatgtcacaatg 291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 19655277 - 19655239
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  19655277 tgacattggtgacattgtccaatcacaatgtcacaatgc 19655239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 32485763 - 32485730
Alignment:
Q  18 cacagaatacacagaagaaagtgatggcaagtta 51  Q
    |||| |||||||||||||||||||||||||||||    
T  32485763 cacataatacacagaagaaagtgatggcaagtta 32485730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 12913822 - 12913858
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaat 175  Q
    |||||||||||| |||| |||||||||||||||||||    
T  12913822 tgacattggtgacattggccaatcacaatgtcacaat 12913858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 13312274 - 13312322
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgca 178  Q
    |||||| | |||||||| ||| ||||| |||||||||||||||||||||    
T  13312274 agagttaggtgacattgatgacattgatcaatcacaatgtcacaatgca 13312322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 5033289 - 5033242
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  5033289 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 5033242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 35440979 - 35441026
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  35440979 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 35441026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 43844597 - 43844550
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  43844597 agagttggatgacattggtgatattgatcaatcacaatgtcacaatgc 43844550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 10086885 - 10086839
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||| | |||||||||||| |||||||||||||||||||||||||    
T  10086885 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 10086839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 5033171 - 5033218
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  5033171 agagttgggtgacattggtgacattgaccaatcacaatgccacaatgc 5033218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 5667107 - 5667154
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| |||||||||||||| ||||  ||||||||||||||||||||    
T  5667107 agagttggatgacattggtgacattggtcaatcacaatgtcacaatgc 5667154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 5667225 - 5667178
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    ||||||||||||||||||||| |||| ||||| ||||||||| |||||    
T  5667225 agagtttgatgacattggtgacattggccaattacaatgtcataatgc 5667178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 33841601 - 33841648
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| |||||||||||||| |||||||||||    
T  33841601 agagttgggtgacattggtgacattgaccaatcacattgtcacaatgc 33841648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 23444279 - 23444326
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  23444279 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 23444326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 47661970 - 47661923
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  47661970 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 47661923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 35682307 - 35682247
Alignment:
Q  117 acttatgtaccacagagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    ||||||||  || |||||| | |||||||||||| ||||||| ||||||||||||||||||    
T  35682307 acttatgtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgc 35682247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 42375138 - 42375091
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||    
T  42375138 agagttgggtgacattggtgacattgatcaatcacaatgtcacaatgc 42375091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 51265573 - 51265526
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| |||||||||||| |||||||||||||    
T  51265573 agagttgggtgacattggtgacattgaccaatcataatgtcacaatgc 51265526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 44380049 - 44380013
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaat 175  Q
    |||||||||||| |||||||||||||||||| |||||    
T  44380049 tgacattggtgatattgaccaatcacaatgttacaat 44380013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 5995497 - 5995450
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  5995497 agagttggatgacattggtgacattgaccaatcacaatgccacaatgc 5995450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 37155056 - 37155103
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||    
T  37155056 agagtttggtgacattggtgacattggccaatcacaatgtcacaatgc 37155103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 48993927 - 48993974
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||    
T  48993927 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatgc 48993974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 21630061 - 21630099
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  21630061 tgacattggtgacattgaccaatcacaatgtcacaatgc 21630099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 28395656 - 28395694
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  28395656 tgacattggtgacattgaccaatcacaatgtcacaatgc 28395694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 29371487 - 29371449
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  29371487 tgacattggtgatattgaccaatcacaatgtcacaatgc 29371449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 32540869 - 32540829
Alignment:
Q  137 gatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  32540869 gatgacattggtgacattgaccaatcacaatgttacaatgc 32540829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 5995379 - 5995426
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    ||||||||||||||||||| | |||| |||||||||||| ||||||||    
T  5995379 agagtttgatgacattggtaacattggccaatcacaatgccacaatgc 5995426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 9157320 - 9157367
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||| | ||||||||||||||||||||||||||    
T  9157320 agagttgggtgacattggtaacattgaccaatcacaatgtcacaatgc 9157367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 17127574 - 17127621
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | ||||||| |||| ||||||||||||||||||||||||||    
T  17127574 agagttaggtgacattagtgacattgaccaatcacaatgtcacaatgc 17127621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 29179607 - 29179654
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| | ||||||||||||||||||||||||    
T  29179607 agagttgggtgacattggtgacactgaccaatcacaatgtcacaatgc 29179654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 33219701 - 33219654
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  33219701 agagttggatgacattggtgacattgatcaatcacaatgtcataatgc 33219654  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 48994045 - 48993998
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  48994045 agagttgggtgacattggtgacattgaccaatcacaatgccacaatgc 48993998  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 36290535 - 36290490
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaat 175  Q
    |||||| | |||||||||||  ||||||||||||||||||||||||    
T  36290535 agagttgggtgacattggtggcattgaccaatcacaatgtcacaat 36290490  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 46932101 - 46932064
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  46932101 tgacattggtgacattgaccaatcacaatgccacaatg 46932064  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 11016997 - 11016951
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||| | |||||||||||| |||||||||||||||||||||||||    
T  11016997 agagttgggtgacattggtgacattgaccaatcacaatgtcacaatg 11016951  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 15027661 - 15027623
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  15027661 tgacattggtgacattgaccaatcacaatgtcacaatgc 15027623  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 41018356 - 41018309
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||||||||||||||| ||||||||    
T  41018356 agagttgggtgacattggtgacattgaccaatcacaatgccacaatgc 41018309  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 48000865 - 48000819
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||| | |||||||||||| ||||||||||||||||| |||||||    
T  48000865 agagttgggtgacattggtgacattgaccaatcacaatgccacaatg 48000819  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 22764819 - 22764782
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  22764819 tgacattggtgatattggccaatcacaatgtcacaatg 22764782  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 4290664 - 4290628
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaat 175  Q
    |||||||||||| |||| |||||||||||||||||||    
T  4290664 tgacattggtgacattggccaatcacaatgtcacaat 4290628  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 6721968 - 6722008
Alignment:
Q  137 gatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||||| |||||||||||||||| |||||||||    
T  6721968 gatgacattggtgacattgaccaatcacaatatcacaatgc 6722008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 16514552 - 16514505
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | ||| |||||||| ||||||||||||||||||||||||||    
T  16514552 agagttgggtgagattggtgacattgaccaatcacaatgtcacaatgc 16514505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 14892388 - 14892343
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaat 175  Q
    |||||| |||||||||||||| ||||| |||||||||||| |||||    
T  14892388 agagttggatgacattggtgacattgatcaatcacaatgttacaat 14892343  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 49713 - 49760
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||| ||| ||||||||||||||||||||||||||    
T  49713 agagttgggtgacattgatgacattgaccaatcacaatgtcacaatgc 49760  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 30734412 - 30734459
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||| |||||||| ||| ||||||| ||||||||||||||||||    
T  30734412 agagtttggtgacattgatgacattgaccgatcacaatgtcacaatgc 30734459  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 45103119 - 45103166
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||||    
T  45103119 agagttgggtgacattggtgatattgatcaatcacaatgtcacaatgc 45103166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 47492066 - 47492104
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  47492066 tgacattggtgacattggccaatcacaatgtcacaatgc 47492104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 30580775 - 30580811
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaat 175  Q
    |||||||||||| |||||||||||| |||||||||||    
T  30580775 tgacattggtgatattgaccaatcataatgtcacaat 30580811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 177
Target Start/End: Complemental strand, 7166 - 7128
Alignment:
Q  139 tgacattggtgaaattgaccaatcacaatgtcacaatgc 177  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  7166 tgacattggtgacattggccaatcacaatgtcacaatgc 7128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 7384498 - 7384544
Alignment:
Q  130 agagtttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||| ||||||||| |||| |||||||||||||||||||| ||||    
T  7384498 agagttggatgacattagtgacattgaccaatcacaatgtcataatg 7384544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 17750917 - 17750958
Alignment:
Q  135 ttgatgacattggtgaaattgaccaatcacaatgtcacaatg 176  Q
    |||||||||||||||| ||||  |||||||||||||||||||    
T  17750917 ttgatgacattggtgacattggtcaatcacaatgtcacaatg 17750958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 507731 - 507763
Alignment:
Q  135 ttgatgacattggtgaaattgaccaatcacaat 167  Q
    |||||||||||||||| ||||||||||||||||    
T  507731 ttgatgacattggtgacattgaccaatcacaat 507763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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