View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4554_low_2 (Length: 452)
Name: NF4554_low_2
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 244 - 442
Target Start/End: Original strand, 53402225 - 53402421
Alignment:
| Q |
244 |
ttgcactgaaagatgtagggtaaatgaacgatggatggcatttacaagtcaggacaagctgtcaaagaaaggattctttagaagaaagaagatatgttta |
343 |
Q |
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| T |
53402225 |
ttgcactgaaagatgtagggtaaatgaacgatggatggcatttacaagtcaagacaagctgtcaaa--aaggattcatcagaagaaagaagatatgttta |
53402322 |
T |
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| Q |
344 |
agatttgatttgtccagtaatgaacaaatgaaggcaacagtcgtgtgcggtgttccaacatggtgacgataaatgatttgtccggtaataaactgatga |
442 |
Q |
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| T |
53402323 |
agatttgatttgtccagtaatgaacaaatgaaggcaacagtcgtgtgcggtgttccaacatggtgacgataaatgatttgtccggtaataaacggatga |
53402421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 53402026 - 53402199
Alignment:
| Q |
46 |
cattttactcaactta-gagggtagcttttgtttatcatggcaaccgttggtacaaagaaatatctgatacctgcgcaatgttgatacttggtgggaacc |
144 |
Q |
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| T |
53402026 |
cattttactcaacttaagagggtagcttttgtttatcatggcaaccgttggtacaaagaaatatctgatacctgcgcaatgttgatacttggtgggaacc |
53402125 |
T |
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| Q |
145 |
atgcataaattgaacggtgaaccttttattaaattttagaaggcataaataaaagaaattttgaatggattttt |
218 |
Q |
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| T |
53402126 |
atgcataaattgaacggtgaaccttttattaaattttagaaggcataaataaaagaaattttgaatggattttt |
53402199 |
T |
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