View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4554_low_4 (Length: 390)
Name: NF4554_low_4
Description: NF4554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4554_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 9093454 - 9093102
Alignment:
| Q |
17 |
atgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaatt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9093454 |
atgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaatt |
9093355 |
T |
|
| Q |
117 |
tattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaatt |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9093354 |
tattgttgttacattattttcacaagatagctcgtaacttctgttcccgcaatgaattgggtcattttttagtcgaaatggataagttatgttggaaatt |
9093255 |
T |
|
| Q |
217 |
ttgccacaagatgaaggaggacaagaatgttcttgttcaatagaaagactactgctgctaccttgttggagtagaaacataaataagaacaagaacaaca |
316 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9093254 |
ttgccacaagatgaagggggacaagaatgttcttgttcaatagaaagactactgctgctaccttgttggagtaaaaacataaataagaacaagaacaaca |
9093155 |
T |
|
| Q |
317 |
atatcactctcacccaacacatggaggcgaaattgtttttgatttaaaagagt |
369 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9093154 |
atatcactctcacccaccacatggaggcgaaattgtttttgatttaaaagagt |
9093102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 9007288 - 9007528
Alignment:
| Q |
19 |
gaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattta |
118 |
Q |
| |
|
|||||||||||| |||||||| |||| |||| || | | ||||||||||||||||||||||||||| | ||||| |||||| | || |||||||||| |
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| T |
9007288 |
gaagagcaattagattgttgaactccaagatcaaccaatcggattgtgaaattgttgtagttgatggattgcacatgatattttcctgaatacaaattta |
9007387 |
T |
|
| Q |
119 |
ttgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaatttt |
218 |
Q |
| |
|
||||| |||||||||||||| | || ||||| |||||| |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
9007388 |
aagttgtcacattattttcacatgctaattcgtaccttttgtccccgcaattaattgggtcattatttaatcgaaatgggtaagttatgttggaaatttt |
9007487 |
T |
|
| Q |
219 |
gccacaagatgaaggaggacaagaatgttcttgttcaatag |
259 |
Q |
| |
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||||||||||||||| ||||| | ||| ||||| ||||||| |
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| T |
9007488 |
gccacaagatgaaggtggacatgtatgctcttgctcaatag |
9007528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 8864129 - 8863896
Alignment:
| Q |
18 |
tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattt |
117 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||| || || ||||||||||||||||||||||||||||| | ||||| |||||| | || ||||||| | |
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|
| T |
8864129 |
tgaagagcaattagattgttgaactccgggatcaaccagtctgattgtgaaattgttgtagttgatggattgcacatgatattttcccgaatacaaatat |
8864030 |
T |
|
| Q |
118 |
attgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattt |
217 |
Q |
| |
|
| ||||| ||||||||| ||||||||||||| || | ||| ||||||||||||||| |||| ||||| ||||||||| ||| ||||||| ||||||| |
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|
| T |
8864029 |
aaagttgtaacattatttgcacaagatagctcatacctgctgtccccgcaatgaattggatcatcttttaatcgaaatggataacttatgtttgaaattt |
8863930 |
T |
|
| Q |
218 |
tgccacaagatgaaggaggacaagaatgttcttg |
251 |
Q |
| |
|
| |||||||||||||| |||||| ||| ||||| |
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| T |
8863929 |
taccacaagatgaagggagacaagtatgctcttg |
8863896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 8868366 - 8868142
Alignment:
| Q |
17 |
atgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaatt |
116 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| || | | |||| |||||||||||||||||||||| ||||||| |||||| | || |||||||| |
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|
| T |
8868366 |
atgaagaacaattatcttgttgaattccaatatcaaccaatcggattatgaaattgttgtagttgatggatttcacataatattttccggaatacaaatt |
8868267 |
T |
|
| Q |
117 |
tattgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaatt |
216 |
Q |
| |
|
|| ||||| || ||||||||||||||||| || || | | | ||||||||||||||| |||| ||||| ||||||||| ||| ||||||| |||||| |
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|
| T |
8868266 |
taaggttgtcacgttattttcacaagatagttcatacctgctatccccgcaatgaattggatcatcttttaatcgaaatggataacttatgtttgaaatt |
8868167 |
T |
|
| Q |
217 |
ttgccacaagatgaaggaggacaag |
241 |
Q |
| |
|
|| |||||||||||||| ||||||| |
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|
| T |
8868166 |
ttaccacaagatgaaggtggacaag |
8868142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 9099811 - 9099598
Alignment:
| Q |
18 |
tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattt |
117 |
Q |
| |
|
||||||||||||| |||||||| | ||||||| |||| | |||||||||||| |||||||||||||||| |||| ||||||||||||||| |||| | |
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|
| T |
9099811 |
tgaagagcaattagattgttgaacttcaggatcaactaatcggattgtgaaattattgtagttgatggactggacatggtattttgcagagtataaatat |
9099712 |
T |
|
| Q |
118 |
attgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattt |
217 |
Q |
| |
|
| | |||| |||||||||||||||| ||| ||||| | ||| ||||| || ||||||||| ||||| ||||||||||||| ||||||| || |||| |
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| T |
9099711 |
aattttgtcacattattttcacaagctagttcgtacctgctgtctccgcattgttttgggtcatcttttaatcgaaatgggtaacttatgtttgatattt |
9099612 |
T |
|
| Q |
218 |
tgccacaagatgaa |
231 |
Q |
| |
|
| ||||| |||||| |
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|
| T |
9099611 |
tcccacaggatgaa |
9099598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 258
Target Start/End: Complemental strand, 9136491 - 9136251
Alignment:
| Q |
18 |
tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattt |
117 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| || | | ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||| | |
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|
| T |
9136491 |
tgaagagcaattagattgttgaactccaggatcaaccaatcggattgtgaaatcgttgtagttgatggactgcacataatattttgcagagtataaatat |
9136392 |
T |
|
| Q |
118 |
attgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattt |
217 |
Q |
| |
|
| |||||| |||||||||||||| ||| || ||| | ||| ||||| || ||||||||| ||||| |||||| || | |||| |||||||||| |
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|
| T |
9136391 |
aaacttgttatattattttcacaagctagttcataactgctgtcaccgcagtgttttgggtcatcttttaatcgaaaaggagagcttatcttggaaattt |
9136292 |
T |
|
| Q |
218 |
tgccacaagatgaaggaggacaagaatgttcttgttcaata |
258 |
Q |
| |
|
|||||||| ||||||| || |||| ||||||||| |||||| |
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|
| T |
9136291 |
tgccacaatatgaaggggggcaagtatgttcttgatcaata |
9136251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 9065526 - 9065739
Alignment:
| Q |
18 |
tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattt |
117 |
Q |
| |
|
|||||||||||| || ||||| ||||||||| || || |||||||| |||||||||||||||||||| ||||| ||||||| |||||||||| | |
|
|
| T |
9065526 |
tgaagagcaattcatttcttgaactccaggatcaaccagtctgattgtaaaattgttgtagttgatggaacggacattatattttgtggagtacaaatat |
9065625 |
T |
|
| Q |
118 |
attgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattt |
217 |
Q |
| |
|
| ||||| |||||||||||||||||||| || || || |||| ||||| || ||||| |||| ||||| ||||||||| ||| |||| || || |||| |
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|
| T |
9065626 |
aaagttgtcacattattttcacaagatagttcatacttgctgttaccgcagtgtattggatcatcttttaatcgaaatggataacttatttttgatattt |
9065725 |
T |
|
| Q |
218 |
tgccacaagatgaa |
231 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
9065726 |
tgccacaagatgaa |
9065739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 8972247 - 8972490
Alignment:
| Q |
18 |
tgaagagcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaattt |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || | | |||||||||||||||||||||||| ||| |||| ||||||||||| || |||| | |
|
|
| T |
8972247 |
tgaagagcaattagattgttgaattccaggatcaaccaatcggattgtgaaattgttgtagttgatcgaccggacatgatattttgcagaatataaatat |
8972346 |
T |
|
| Q |
118 |
attgttgttacattattttcacaagatagctcgtaatttttgttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattt |
217 |
Q |
| |
|
| ||||| |||||||||||||||| ||| || || | ||| || ||| | ||||||||| ||||| ||||||||| ||| |||||| |||||| |
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|
| T |
8972347 |
aaagttgtgacattattttcacaagctagttcatacctgctgtctccacaacgttttgggtcatcttttaatcgaaatggataacatatgtttaaaattt |
8972446 |
T |
|
| Q |
218 |
tgccacaagatgaaggaggacaagaatgttcttgttcaatagaa |
261 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| || ||||||||| |
|
|
| T |
8972447 |
tgccacaagaggaagggggacaagtatgttttttctcaatagaa |
8972490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 9072242 - 9072061
Alignment:
| Q |
60 |
gattgtgaaattgttgtagttgatggacttcacattgtattttgcagagtacaaatttattgttgttacattattttcacaagatagctcgtaatttttg |
159 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||| | || ||||||| || |||| |||||||||||||||||||| ||||| | | |
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|
| T |
9072242 |
gattgtgaaattgttgtagttgatggattgcacataatattttcccgaatacaaatataaagttgccacattattttcacaagatagttcgtacctgctt |
9072143 |
T |
|
| Q |
160 |
ttcccgcaatgaattgggtcattttttagtcgaaatgggtaagttatgttggaaattttgccacaagatgaaggaggacaag |
241 |
Q |
| |
|
| ||||| || | ||||||| || || ||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
9072142 |
tctccgcagtgtttggggtcatcttgtaatcgaaatgggtaacttatgttggaaattttgccacaagaagaaggtggacaag |
9072061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 9475438 - 9475363
Alignment:
| Q |
23 |
agcaattatcttgttgaattccaggatccactagcctgattgtgaaattgttgtagttgatggacttcacattgta |
98 |
Q |
| |
|
|||||| ||| | ||||||||||||||| ||||| ||||||||| | || | ||||||||| |||||||||||||| |
|
|
| T |
9475438 |
agcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgta |
9475363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 9444160 - 9444110
Alignment:
| Q |
174 |
tgggtcattttttagtcgaaatgggtaagttatgttggaaattttgccaca |
224 |
Q |
| |
|
|||||| | ||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
9444160 |
tgggtcgtgttttagtcggaatggataagttatgttggaaatttttccaca |
9444110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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