View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4555-Insertion-2 (Length: 382)
Name: NF4555-Insertion-2
Description: NF4555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4555-Insertion-2 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 76 - 382
Target Start/End: Complemental strand, 53779004 - 53778698
Alignment:
| Q |
76 |
ttaatattatgttaacctttgaaatgattggtttatattataaaacaatatatctaccactcgcaaactggataattcattttcaagaactcaataatct |
175 |
Q |
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| T |
53779004 |
ttaatattatgttaacctttgaaatgattggtttatattataaaacaatatatctaccactcgcaaactggataattcattttcaagaactcaataatct |
53778905 |
T |
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| Q |
176 |
aatgtgtacccaaaaaagttatattactgatttatcatattatacatgcatctcatgttttttcttaaaaatgattattgtgttatatttaaagcaagac |
275 |
Q |
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| T |
53778904 |
aatgtgtacccaaaaaagttatattactgatttatcatattatacatgtatctcatgttttttcttaaaaattattatcgtgttatatttaaagcaagac |
53778805 |
T |
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| Q |
276 |
tgtgtgttattttcaattgtataagtgttgttttattcacacnnnnnnntagtataatcttgtttaataagtactattttacgcatcttagatttaataa |
375 |
Q |
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| T |
53778804 |
tgtgtgttattttcaattgtataagtgttgttttattcacacaaaaaaataatataatcttgtttaataagtactattttacgcatcttagatttaataa |
53778705 |
T |
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| Q |
376 |
tccatag |
382 |
Q |
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| T |
53778704 |
tccatag |
53778698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 53779877 - 53779807
Alignment:
| Q |
8 |
gcatatactctcacacacgcagtatatctgttttttaaaatattgcatgcaccctgttagatattaattta |
78 |
Q |
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| T |
53779877 |
gcatatactctcacacacacagtatatctgttgtttaaaatattgcatgcaccctgttagatattaattta |
53779807 |
T |
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