View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4555_high_2 (Length: 377)
Name: NF4555_high_2
Description: NF4555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4555_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 33756181 - 33755824
Alignment:
| Q |
1 |
gcataagaagattaggatctattaaaaaattgttttgaattaatttttcgatagtttttattcaaaagtttatttgtatcgatgacatacatttccatca |
100 |
Q |
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| T |
33756181 |
gcataagaagattaggatctattaaaaaattgttttgatttaatttttcgatagtttttattcaaaagtttatttgtatcgatgacatacatttccatca |
33756082 |
T |
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| Q |
101 |
atgtgtagaggctgtgatgcatctatccatatagactcaacaaataggactaattcagagaaagaaaatgactcaaacgaaactgttagaggctatgatc |
200 |
Q |
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| T |
33756081 |
atgtgtagaggctgtgatgcatctatccacatagactcaaaaaataggactaattcagagaaagaaaatgacgcaaacgaaactgttagaggctatgatc |
33755982 |
T |
|
| Q |
201 |
caatggacgagcggaaggaaacaatagaagttatttgtactttaacagtatcatgtgcagacatcataacactggctagaacagatgttctggccttatc |
300 |
Q |
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| T |
33755981 |
caatggacgagcggaaggaaacaatagaagttatttgtcctttaacagtatcatgtgcagacattataacactggctagaacagatgttctggccttatc |
33755882 |
T |
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| Q |
301 |
cggaggaccaaaatacaatgttccgactaagcttgtgaatatgtttgaatcaggtaat |
358 |
Q |
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| T |
33755881 |
cggaggaccaaaatacaatgttccgactaagcttgtgaatttgtttgaatcaggtaat |
33755824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 33762155 - 33761804
Alignment:
| Q |
1 |
gcataagaagattaggatctattaaaaaattgttttgaattaatttttcgatagtttttattcaaaagtttatttgtatcgatgacatacatttccatca |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33762155 |
gcataagaagattgggatctattaaaaaattgttttgatttaatttt-cgatagtttttattcaaaagtttatttgtatcgataacatacatttccatca |
33762057 |
T |
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| Q |
101 |
atgtgtagaggctgtgatgcatctatccatatagactcaacaaataggactaattcagagaaagaaaatgactcaaacgaaactgttagaggctatgatc |
200 |
Q |
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| T |
33762056 |
atgtgtaggggttgtgatgcatctcttctcatag-ctcaacaaatagcacgaaatcagagaaataaaatgacgcaaacgaaactgttagaggctatgatc |
33761958 |
T |
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| Q |
201 |
caatggacgagcggaaggaaacaatagaagttatttgtactttaacagtatcatgtgcagacatcataacactggctagaacagatgttctggccttatc |
300 |
Q |
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||| ||||||| |||||||||||| |||||||||||| ||| |||| ||||||||||||||||| ||||||| |||||| ||||||| |||||||||| |
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| T |
33761957 |
taatagacgagccgaaggaaacaatcgaagttatttgtccttcaacaatatcatgtgcagacatcttaacactttctagaagagatgttttggccttatc |
33761858 |
T |
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| Q |
301 |
cggaggaccaaaatacaatgttccgactaagcttgtgaatatgtttgaatcagg |
354 |
Q |
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| T |
33761857 |
cggaggaccaaaatacaatgttccgactaagcttgtgaaattgtttgaatcagg |
33761804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 324
Target Start/End: Complemental strand, 33764193 - 33764120
Alignment:
| Q |
251 |
tcatgtgcagacatcataacactggctagaacagatgttctggccttatccggaggaccaaaatacaatgttcc |
324 |
Q |
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||||||||||||||| || |||| |||| || ||||| | |||||||||| |||||||||||||||||| |||| |
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| T |
33764193 |
tcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcc |
33764120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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