View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4556_high_3 (Length: 259)
Name: NF4556_high_3
Description: NF4556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4556_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 20894820 - 20894582
Alignment:
| Q |
3 |
tgttccatgctgaactcaatagctttaggaggctctgataggttttggaataatggcttcacagggatagatgcgattttgcatggtttactctctgggg |
102 |
Q |
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| T |
20894820 |
tgttccatgctgaactcaatttctttaggaggctctggtaggttttggaataatggcttcacagggatagatgcgattttgcatggtttactctctgggg |
20894721 |
T |
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| Q |
103 |
aatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtgcaaattgaggattggagattagggctttccatgattt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20894720 |
aatagaaaaatcgttgatggtttatggttggatccacgattaagttccaaaggtgagtttgtgcaaattgaggatcggagattagggctttccatgattt |
20894621 |
T |
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| Q |
203 |
acacacgcacttgtattggaggagggttttcaccggaag |
241 |
Q |
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| T |
20894620 |
acacacgcacttgtattggaggagggttttcaccggaag |
20894582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 20604171 - 20604411
Alignment:
| Q |
1 |
catgttccatgctgaactcaatagctttaggaggctctgataggttttggaataatggcttcacagggatagatgcgattttgcatggtttactctctgg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
20604171 |
catgttccatgctgaactcagtagctttaggaggctctgataggttttcgaataatggcttcacagggatagatgcgattttgcttggtttactctctgg |
20604270 |
T |
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| Q |
101 |
ggaatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtgcaaattgaggattggagattagggctttccatgat |
200 |
Q |
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| T |
20604271 |
ggaatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtgtaaattgaggatcggagattagggttttccaggat |
20604370 |
T |
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| Q |
201 |
ttacacacgcacttgtattggaggagggttttcaccggaag |
241 |
Q |
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|||| ||||||||||||||| ||||||| |||||||||||| |
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| T |
20604371 |
ttactcacgcacttgtattgaaggagggatttcaccggaag |
20604411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 20596688 - 20596852
Alignment:
| Q |
1 |
catgttccatgctgaactcaatagctttaggaggctctgataggttttggaataatggcttcacagggatagatgcgattttgcatggtttactctctgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20596688 |
catgttccatgctgaactcaatagctttaggaggctctgataggttttcgaataatggcttcacagggatagatgcgattttgcatggtttactctctgg |
20596787 |
T |
|
| Q |
101 |
ggaatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtg |
165 |
Q |
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| T |
20596788 |
ggaatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtg |
20596852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 20585822 - 20586060
Alignment:
| Q |
3 |
tgttccatgctgaactcaatagctttaggaggctctgataggttttggaataatggcttcacagggatagatgcgattttgcatggtttactctctgggg |
102 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| ||| |||| || || | | ||| | |||| |
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| T |
20585822 |
tgttccatgctgaactcaatttctttaggaggctctggtaggttttcgaataatggcttcacagcgataaatgtgattctgtattgctcactagccgggg |
20585921 |
T |
|
| Q |
103 |
aatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtgcaaattgaggattggagattagggctttccatgattt |
202 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
20585922 |
aatagaaaaatagttgatgggttatggttggatccacgattaagttccgaaggtgagtttgtgcaaattgaggatcggagattagggttttccatgattt |
20586021 |
T |
|
| Q |
203 |
acacacgcacttgtattggaggagggttttcaccggaag |
241 |
Q |
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| T |
20586022 |
acacacgctctggaattggaggagggttttcaccggaag |
20586060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 20611976 - 20612214
Alignment:
| Q |
3 |
tgttccatgctgaactcaatagctttaggaggctctgataggttttggaataatggcttcacagggatagatgcgattttgcatggtttactctctgggg |
102 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||||||| || | | | ||| |
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| T |
20611976 |
tgttccatactgaacttaatagctttaggaggctctgatatgttttccaataatggcttcaaagggatagatgcaattttgcactgtacaatattcgggt |
20612075 |
T |
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| Q |
103 |
aatagaaaaatcgttgatggtttatggttggatccacgattaagttccgaaggtgagtttgtgcaaattgaggattggagattagggctttccatgattt |
202 |
Q |
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||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
20612076 |
tatagaaaaatcgttgataggttacggttggatccaagattaagttccgaaggtgagtttgtgcaaactgaggatcggagattagggttttccatgattt |
20612175 |
T |
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| Q |
203 |
acacacgcacttgtattggaggagggttttcaccggaag |
241 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
20612176 |
acacacgcacttgtattgcaggagggttttcaccggaag |
20612214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 43907724 - 43907663
Alignment:
| Q |
180 |
gagattagggctttccatgatttacacacgcacttgtattggaggagggttttcaccggaag |
241 |
Q |
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|||||||||| |||||||||||| || || ||||||||||||| |||| |||||||||||| |
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| T |
43907724 |
gagattagggttttccatgatttgcaaacacacttgtattggacaagggatttcaccggaag |
43907663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 23681707 - 23681634
Alignment:
| Q |
168 |
aattgaggattggagattagggctttccatgatttacacacgcacttgtattggaggagggttttcaccggaag |
241 |
Q |
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|||||||||||||| ||||||| |||||||||||| | |||||||| ||||||| |||| | |||| ||||| |
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| T |
23681707 |
aattgaggattggaaattagggttttccatgatttggaaacgcactttaattggagaagggatctcacaggaag |
23681634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 45078387 - 45078431
Alignment:
| Q |
164 |
tgcaaattgaggattggagattagggctttccatgatttacacac |
208 |
Q |
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| T |
45078387 |
tgcaaattgaggattagagattagggttttccatgttttacacac |
45078431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 45089709 - 45089753
Alignment:
| Q |
164 |
tgcaaattgaggattggagattagggctttccatgatttacacac |
208 |
Q |
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| T |
45089709 |
tgcaaattggggattggagattagggttttccatgttttacacac |
45089753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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