View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4556_low_2 (Length: 328)
Name: NF4556_low_2
Description: NF4556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4556_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 20604180 - 20603863
Alignment:
| Q |
1 |
atggaacatgagtatgatatttttggttcatgcaatgggttgttgtgtctattttctgtcaaagaaggttatgttacactgttgaacccttctatcgaat |
100 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20604180 |
atggaacatgagtatggtattcttggttcatgcaatgggttgttgtgtctattttctttcaaagaaggttatgttacattgttgaacccttctatcgaat |
20604081 |
T |
|
| Q |
101 |
ggaaatccaaaatatctccaacccttgattcttatgaatatcataaatattggatcacatatcatgactttggctatgatcatgtgaatgaccgatacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20604080 |
ggaaatccaaaatatctccaacccttgattcttatgaatatcataaatattggatcacatatcatggctttggctatgatcatgtgaatgaccgatacaa |
20603981 |
T |
|
| Q |
201 |
ggtgctagcagttgtgtgtgttgtggccaatggaattgttaaaagattgacacaaattcatacttttggtgaaaattcttggacaagtattccgaatttc |
300 |
Q |
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| T |
20603980 |
ggtgctagcagttgtgtgtgttgtggctaatggaattgttaaaaaattgacacaaattcatacttttggtgaaaattcttggacaagtattccgaatttc |
20603881 |
T |
|
| Q |
301 |
ccttccccttctcctatg |
318 |
Q |
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|||||||||||||||||| |
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| T |
20603880 |
ccttccccttctcctatg |
20603863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 20596697 - 20596394
Alignment:
| Q |
1 |
atggaacatgagtatgatatttttggttcatgcaatgggttgttgtgtctattttctgtcaaagaaggttatgttacactgttgaacccttctatcgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20596697 |
atggaacatgagtatgatatttttggttcatgcaatgggttgttgtgtctattttctgtcaaagaaggttatgttacattgttgaacccttctatcgaat |
20596598 |
T |
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| Q |
101 |
ggaaatccaaaatatctccaacccttgattcttatgaatatcataaatattggatcacatatcatgactttggctatgatcatgtgaatgaccgatacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20596597 |
ggaaatccaaaatatctccaacccttgattcttataaatatcataaatattggatcacatatcatggctttggctatgatcatgtgaatgaccgatacaa |
20596498 |
T |
|
| Q |
201 |
ggtgctagcagttgtgtgtgttgtggccaatggaattgttaaaagattgacacaaattcatacttttggtgaaaattcttggacaagtattccgaatttc |
300 |
Q |
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|||||||||||||| |||| |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20596497 |
ggtgctagcagttgcgtgtagtgtggctaatggaattattaaaaatttgacacaaattcatacttttggtgaaaattcttggacaactattccgaatttc |
20596398 |
T |
|
| Q |
301 |
cctt |
304 |
Q |
| |
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|||| |
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| T |
20596397 |
cctt |
20596394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 20611983 - 20611690
Alignment:
| Q |
1 |
atggaacatgagtatgatatttttggttcatgcaatgggttgttgtgtctattttctgtcaaagaaggttatgttacactgttgaacccttctatcgaat |
100 |
Q |
| |
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|||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
20611983 |
atggaacacaagtatcgtattcttggttcatgcaatgggttgttgtgtctattttttgtcaaagaaggttatgttagattgttgaacccttctatcgaat |
20611884 |
T |
|
| Q |
101 |
ggaaatccaaaatatctccaacccttgattcttatgaatatcataaatattggatcacatatcatgactttggctatgatcatgtgaatgaccgatacaa |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
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| T |
20611883 |
ggaaatccaaaaaatctccaacccttgattcttatgaatctcataaatattggatcacatattatggctttggctatgatcatgtgaatgacaaatacaa |
20611784 |
T |
|
| Q |
201 |
ggtgctagcagttgtgtgtgttgtggccaatggaattgttaaaagattgacacaaattcatacttttggtgaaaattcttggacaagtattccgaatttc |
300 |
Q |
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||| |||||| ||| || |||| | ||| | || | ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20611783 |
ggttctagca---------gttcatgctaatgaatttggtggaaaagtgatacaaattcatacttttggtgaaaattcttggacaactattccgaatttc |
20611693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 20894813 - 20895104
Alignment:
| Q |
1 |
atggaacatgagtatgatatttttggttcatgcaatgggttgttgtgtctattttctgtcaaagaaggttatgttacactgttgaacccttctatcgaat |
100 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20894813 |
atggaacacaagtatcgtattcttggttcatgcaatgggctgttgtgtctattttctgtcaaagaaggttatgttacattgttgaacccttctatcgaat |
20894912 |
T |
|
| Q |
101 |
ggaaatccaaaatatctccaacccttgattcttatgaatatcataaatattggatcacatatcatgactttggctatgatcatgtgaatgaccgatacaa |
200 |
Q |
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|||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||| ||| ||||||||||||||||||| ||||| |||||| |
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| T |
20894913 |
ggaaatccaaaaaatctccaacccttgattgttatgatgatcataaa---tggatcacatatgatggctttggctatgatcatgtgcatgacaaatacaa |
20895009 |
T |
|
| Q |
201 |
ggtgctagcagttgtgtgtgttgtggccaatggaattgttaaaagattgacacaaattcatacttttggtgaaaattcttggacaagtattccgaatttc |
300 |
Q |
| |
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| |||||||| |||||||| |||| | ||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20895010 |
gttgctagca---------gttgtggctaatgaatttggtggaaaattgacacaaattcatacttttggtgaaaattcttggacaactattccgaatttc |
20895100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 20585829 - 20585538
Alignment:
| Q |
1 |
atggaacatgagtatgatatttttggttcatgcaatgggttgttgtgtctattttctgtcaaagaaggttatgttacactgttgaacccttctatcgaat |
100 |
Q |
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|||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
20585829 |
atggaacacaagtatcgtattcttggttcatgcaatgggttgttgtgtctattttctgtcaataaaggttatgttagactgttgaacccttctatcgaat |
20585730 |
T |
|
| Q |
101 |
ggaaatccaaaatatctccaacccttgattcttatgaatatcataaatattggatcacatatcatgactttggctatgatcatgtgaatgaccgatacaa |
200 |
Q |
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|||||||||||| ||||||||||||||||| |||||| || ||||| |||||||||||| ||| ||||||||||||||||||| ||||| |||||| |
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| T |
20585729 |
ggaaatccaaaaaatctccaacccttgattgttatgatgatgataaa---tggatcacatatgatggctttggctatgatcatgtgcatgacaaatacaa |
20585633 |
T |
|
| Q |
201 |
ggtgctagcagttgtgtgtgttgtggccaatggaattgttaaaagattgacacaaattcatacttttggtgaaaattcttggacaagtattccgaatttc |
300 |
Q |
| |
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| |||||||| ||| |||| |||||| ||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20585632 |
gttgctagca---------gttctggctaatggatttgggggacaagtgacacaaattcatacttttggtgaaaattcttggacaactattccgaatttc |
20585542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 20578685 - 20578649
Alignment:
| Q |
18 |
tatttttggttcatgcaatgggttgttgtgtctattt |
54 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
20578685 |
tatttttggttcatgcaatgggttgttgtgtctattt |
20578649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 20575992 - 20575956
Alignment:
| Q |
18 |
tatttttggttcatgcaatgggttgttgtgtctattt |
54 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| |
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| T |
20575992 |
tatttttggttcatgcattgggttgttgtgtctattt |
20575956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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