View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4557_low_1 (Length: 554)
Name: NF4557_low_1
Description: NF4557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4557_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 41795883 - 41795516
Alignment:
| Q |
18 |
catatacatggcatcttgttaatcatactattatcattattatttactccaataacatagcaacggtatgtaatcaaatgcttagagtaagttggttggt |
117 |
Q |
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| T |
41795883 |
catatacatggcatcttgttaatcatactattatcattattatttactccaataacatagcaacggtacgtaatcaaatgcttagagtaagttggttggt |
41795784 |
T |
|
| Q |
118 |
aaaaaatagttagagcaatgcaatcaattacttattaaaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaa |
217 |
Q |
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| T |
41795783 |
aaaaaatagttagagcaatgcaatcaattacttattaaaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaa |
41795684 |
T |
|
| Q |
218 |
tggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggtt--ttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattct |
315 |
Q |
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| T |
41795683 |
tggatgcatacatctaaaatagcatgatcaaaagaaagaagatcatggttgctgtttacttaaatcaaaccatgactaaatgccgtctagcatcaattct |
41795584 |
T |
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| Q |
316 |
aagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
383 |
Q |
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| T |
41795583 |
tagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 155 - 385
Target Start/End: Complemental strand, 41760968 - 41760725
Alignment:
| Q |
155 |
aaaaagaaatttggcatgtaaacttgctctttgttaatatggggaaatctttgcaaaatttaatggatgcatacatctaa-------aata------gca |
241 |
Q |
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| T |
41760968 |
aaaaagaaatttggcatggaaacttgctctttgttaatatctg-aaatctttgcaaaatttaatggatgcatacatctaatttctaaaatacaagaagca |
41760870 |
T |
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| Q |
242 |
tgatcaaaagaaagaagatcatgg-ttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
340 |
Q |
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| T |
41760869 |
tgatcaaaagaaagaagatcatgggttttgttgcttaaatcaaaccatgattaaatgccgtctagcatcaattctaagatcttctttcatctttctaatg |
41760770 |
T |
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| Q |
341 |
aaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
385 |
Q |
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| T |
41760769 |
aaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 41795457 - 41795382
Alignment:
| Q |
454 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttcttct |
529 |
Q |
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| T |
41795457 |
aattagaatgtaatcaatttccgaccctttatctccgtcttcatcatctgcatcaaatagttcaacttcttcttct |
41795382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 454 - 526
Target Start/End: Complemental strand, 41760656 - 41760584
Alignment:
| Q |
454 |
aattagaatgtaatcaatttccgacaatttatctccatcttcatcatctgcatcaaatagttcaacttcttct |
526 |
Q |
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| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctccctcatcatcatgtgcatcaaatagttcaacttcttct |
41760584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 381
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
326 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
381 |
Q |
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| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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