View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4557_low_2 (Length: 516)

Name: NF4557_low_2
Description: NF4557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4557_low_2
NF4557_low_2
[»] chr4 (2 HSPs)
chr4 (223-506)||(21085214-21085499)
chr4 (20-146)||(21085011-21085137)
[»] chr2 (2 HSPs)
chr2 (20-119)||(40871012-40871111)
chr2 (417-499)||(40870799-40870881)
[»] chr7 (1 HSPs)
chr7 (396-470)||(41268739-41268813)
[»] chr1 (1 HSPs)
chr1 (414-466)||(27685788-27685840)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 223 - 506
Target Start/End: Original strand, 21085214 - 21085499
Alignment:
Q  223 tctcacaatataagtcgttttattaaattttatacgaattaagagacagataaaattaaatattttttgcggaaatttttcccgctgaaatgacataaaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21085214 tctcacaatataagtcgttttattaaattttatacgaattaagagatagataaaattaaatattttttgcggaaatttttcccgctgaaatgacataaaa 21085313  T
Q  323 aatgagacgacgtttttgtttactaaaatgacgtatatcgtgagacggagaa----tgattttcaacattagtcaaacttacatagagggaagtaataac 418  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||| |||||||||||    
T  21085314 --tgagacgacgtttttgtttactaaaatgacgtatatcgtgagacggagaagtggtgattttcaacattagtcaaactcacatagagagaagtaataac 21085411  T
Q  419 tccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccagatttataagaatgaagtgacttgaatccactacctatg 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21085412 tccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccggatttataagaatgaagtgacttgaatccactacctatg 21085499  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 21085011 - 21085137
Alignment:
Q  20 cccatctccacttcctctcatatatacatttgtttgtaacacatatggcttaccaggtgtagttccaagaaactcaatgtcaatttcatcatggtttcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21085011 cccatctccacttcctctcatatatacatttgtttgtaacacatatggcttaccaggtgtagttccaagaaactcaatgtcaatttcatcatggtttcct 21085110  T
Q  120 ggatggtcttggttatttgaaagctgc 146  Q
    |||||||||||||||||||||||||||    
T  21085111 ggatggtcttggttatttgaaagctgc 21085137  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 40871111 - 40871012
Alignment:
Q  20 cccatctccacttcctctcatatatacatttgtttgtaacacatatggcttaccaggtgtagttccaagaaactcaatgtcaatttcatcatggtttcct 119  Q
    |||||||||||||||||| || || |||||||| || ||||||||||||||| |  ||||||| ||||| ||||||||||| |||||||||||| |||||    
T  40871111 cccatctccacttcctctaatgtacacatttgtctgcaacacatatggcttatcttgtgtagtaccaaggaactcaatgtctatttcatcatgggttcct 40871012  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 499
Target Start/End: Complemental strand, 40870881 - 40870799
Alignment:
Q  417 actccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccagatttataagaatgaagtgacttgaatccact 499  Q
    ||||| |||||||| || || ||||||||||  |||| |||||| ||||||||||||||||| |||  |||||||||||||||    
T  40870881 actcctgcagtataacctggttgaagcttaaccgcagtaccaaaatatccagatttataagagtgatatgacttgaatccact 40870799  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 41268813 - 41268739
Alignment:
Q  396 cttacatagagggaagtaataactccagcagtatagccaggatgaagcttaattgcagcaccaaagtatccagat 470  Q
    ||||||||||  || || |||||||| |||||||| ||||| ||||||||||| | |||||||||||| ||||||    
T  41268813 cttacatagaaagatgttataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagtagccagat 41268739  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 466
Target Start/End: Original strand, 27685788 - 27685840
Alignment:
Q  414 ataactccagcagtatagccaggatgaagcttaattgcagcaccaaagtatcc 466  Q
    |||||||| ||||| |||||||||||||||||||| | ||| |||||||||||    
T  27685788 ataactcctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcc 27685840  T

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