View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4557_low_3 (Length: 374)
Name: NF4557_low_3
Description: NF4557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4557_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 139 - 368
Target Start/End: Original strand, 30988371 - 30988600
Alignment:
| Q |
139 |
ttcatgtattgcatatcatcaccagaagattaaagcaattgtacattagtgcatgtctgatctgtgctgttttaaaatgatgtagatgaacaagcagaga |
238 |
Q |
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| T |
30988371 |
ttcatgtattgcatatcatcaccagaagattaaagcaattgtacattagtgcatgtctgatctgtgctgttttaaaatgatgtagatgaacaagcagaga |
30988470 |
T |
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| Q |
239 |
acatcccaggaatttcttcacttcatatagaagacgttcaaaccgtactttgcaaaaacgatcatcaagttttgcagcttgcattgggatgcatttccaa |
338 |
Q |
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| T |
30988471 |
acatcccaggaatttcttcatttcatatagaagacgttcaaaccgtactttgcaaaaacgatcatcaagttttgcagcttgcattgggatgcatttccaa |
30988570 |
T |
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| Q |
339 |
agtgccaaaagcgaattatcttcttctcac |
368 |
Q |
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| T |
30988571 |
ggtgccaaaagcgaattatcttcttctcac |
30988600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 30988144 - 30988275
Alignment:
| Q |
1 |
agctcatcatagtttatacaaaaccagattggttttcttttattatagaaatagcttattcgtaagtgcttatatgatgcacacttatcctatatgctgc |
100 |
Q |
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| T |
30988144 |
agctcatcatagtttatacaaaaccatattggttttcttttattatagaaatagcttattcataagtgcttatatgatgcacacttatcctatatgctgc |
30988243 |
T |
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| Q |
101 |
aaagttgtttatccaaacagagccttagtatt |
132 |
Q |
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| T |
30988244 |
aaagttgtttatccaaacagagccttagtatt |
30988275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 368
Target Start/End: Original strand, 31002231 - 31002367
Alignment:
| Q |
232 |
gcagagaacatcccaggaatttcttcacttcatatagaagacgttcaaaccgtactttgcaaaaacgatcatcaagttttgcagcttgcattgggatgca |
331 |
Q |
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| T |
31002231 |
gcagagaacgtcccaggaatttcgtctcttcatatagaagaccttcgatctgttgttcgcggaaaccatcctcgagcaatgcagctctcattggaatgca |
31002330 |
T |
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| Q |
332 |
tttccaaagtgccaaaagcgaattatcttcttctcac |
368 |
Q |
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| T |
31002331 |
tttccaaagttaccaaagcaaattaccttcttctcac |
31002367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 34958289 - 34958231
Alignment:
| Q |
43 |
ttatagaaatagcttattcgtaagtgcttatatgatgcacacttatcctatatgctgca |
101 |
Q |
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| T |
34958289 |
ttatagaaatagtttattcataagtgcttatatgatgcacgcttatgctataagctgca |
34958231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 10657212 - 10657177
Alignment:
| Q |
43 |
ttatagaaatagcttattcgtaagtgcttatatgat |
78 |
Q |
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| T |
10657212 |
ttatagaagtagcttattcgtaagtgcttatatgat |
10657177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 78
Target Start/End: Original strand, 43530221 - 43530255
Alignment:
| Q |
44 |
tatagaaatagcttattcgtaagtgcttatatgat |
78 |
Q |
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| T |
43530221 |
tatagaaatagcttattcataagtgcttatatgat |
43530255 |
T |
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