View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4557_low_4 (Length: 228)

Name: NF4557_low_4
Description: NF4557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4557_low_4
NF4557_low_4
[»] chr2 (2 HSPs)
chr2 (1-136)||(28668540-28668676)
chr2 (135-215)||(28668745-28668825)
[»] chr5 (4 HSPs)
chr5 (39-137)||(11922723-11922821)
chr5 (25-138)||(20325760-20325874)
chr5 (135-215)||(11922566-11922646)
chr5 (76-136)||(9280383-9280443)
[»] chr7 (1 HSPs)
chr7 (144-213)||(25632885-25632954)
[»] chr6 (1 HSPs)
chr6 (24-136)||(14813257-14813370)
[»] chr4 (1 HSPs)
chr4 (24-136)||(5237799-5237912)
[»] chr1 (1 HSPs)
chr1 (24-136)||(2358189-2358302)


Alignment Details
Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 28668540 - 28668676
Alignment:
Q  1 ttcaaattgttgatggaggagcttaaatttgcgattcgaattcgatcaacctttgagaattgttcttgaa-atcctgccaaacctcaaatgcagtgtcgt 99  Q
    ||||||||||||||||| || | |||||  || ||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  28668540 ttcaaattgttgatggaagaacgtaaatcagcaattcgaatttgatcaacctttgagaatcgttcttgaagatcctgccaaacctcaaatgcagtgtcgt 28668639  T
Q  100 aaaacacaattgtttgagcaatagaatcagaaacaga 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  28668640 aaaacacaattgtttgagcaatagaatcagaaacaga 28668676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 135 - 215
Target Start/End: Original strand, 28668745 - 28668825
Alignment:
Q  135 gaatagatccattgatgaaacctagtttgtccttcgttcccaaagcttgttgcatagatcggtaccaagcaatgtaattgg 215  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28668745 gaatagatccattgatgaaacctagtttgtcctttgttcccaaagcttgttgcatagatcggtaccaagcaatgtaattgg 28668825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 137
Target Start/End: Complemental strand, 11922821 - 11922723
Alignment:
Q  39 aattcgatcaacctttgagaattgttcttgaaatcctgccaaacctcaaatgcagtgtcgtaaaacacaattgtttgagcaatagaatcagaaacagaa 137  Q
    ||||||| |||| ||| |||| ||||||| | ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||    
T  11922821 aattcgaccaacttttaagaaatgttcttaagatcctgccaaacctcaaatacagtgtcgtaaaacacaattctctgagcaatagaattagaaacagaa 11922723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 138
Target Start/End: Original strand, 20325760 - 20325874
Alignment:
Q  25 aaatttgcgattcgaattcgatcaacctttgagaattgttcttgaa-atcctgccaaacctcaaatgcagtgtcgtaaaacacaattgtttgagcaatag 123  Q
    |||||||| || ||||| |||||| |||| || ||  |||| |||| ||| ||||| |||||| | |||||||| ||||| ||||  |||||||||||||    
T  20325760 aaatttgcaatacgaatacgatcagccttagaaaaacgttcatgaagatcttgccatacctcataagcagtgtcataaaagacaacagtttgagcaatag 20325859  T
Q  124 aatcagaaacagaat 138  Q
    |||| ||||||||||    
T  20325860 aatctgaaacagaat 20325874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 11922646 - 11922566
Alignment:
Q  135 gaatagatccattgatgaaacctagtttgtccttcgttcccaaagcttgttgcatagatcggtaccaagcaatgtaattgg 215  Q
    |||||||||||||||| || |||| ||||| |||| ||||||| |  |||||||||||| | | ||| |||||||||||||    
T  11922646 gaatagatccattgataaaccctaatttgttcttctttcccaaggtgtgttgcatagattgattccatgcaatgtaattgg 11922566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 9280443 - 9280383
Alignment:
Q  76 gccaaacctcaaatgcagtgtcgtaaaacacaattgtttgagcaatagaatcagaaacaga 136  Q
    ||||||| |||| |||||| ||  |||||||||| ||||| ||||| ||||||||||||||    
T  9280443 gccaaacttcaagtgcagtatcacaaaacacaatagtttgtgcaattgaatcagaaacaga 9280383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 25632885 - 25632954
Alignment:
Q  144 cattgatgaaacctagtttgtccttcgttcccaaagcttgttgcatagatcggtaccaagcaatgtaatt 213  Q
    |||||||||| |||| ||||| |||||||||||| ||  ||| ||||||||| | |||||||| ||||||    
T  25632885 cattgatgaaccctaatttgttcttcgttcccaatgcgcgtttcatagatcgattccaagcaaggtaatt 25632954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 14813370 - 14813257
Alignment:
Q  24 taaatttgcgattcgaattcgatcaacctttgagaattgttcttg-aaatcctgccaaacctcaaatgcagtgtcgtaaaacacaattgtttgagcaata 122  Q
    ||||||||| || ||||| |||||||  || |||||| ||||||  |||||  |||||||||||| |||||  ||  |||| ||||| |||||||||||     
T  14813370 taaatttgcaatgcgaatacgatcaattttggagaatcgttctttcaaatcaagccaaacctcaagtgcagaatcacaaaaaacaatagtttgagcaatg 14813271  T
Q  123 gaatcagaaacaga 136  Q
    || |||||||||||    
T  14813270 gactcagaaacaga 14813257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 5237912 - 5237799
Alignment:
Q  24 taaatttgcgattcgaattcgatcaacctttgagaattgttcttg-aaatcctgccaaacctcaaatgcagtgtcgtaaaacacaattgtttgagcaata 122  Q
    ||||||||| || ||||| |||||||  || |||||| ||||||  |||||  |||||||||||| |||||  ||  |||| ||||| |||||||||||     
T  5237912 taaatttgcaatgcgaatacgatcaattttggagaatcgttctttcaaatcaagccaaacctcaagtgcagaatcacaaaaaacaatagtttgagcaatg 5237813  T
Q  123 gaatcagaaacaga 136  Q
    || |||||||||||    
T  5237812 gactcagaaacaga 5237799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 2358302 - 2358189
Alignment:
Q  24 taaatttgcgattcgaattcgatcaacctttgagaattgttcttg-aaatcctgccaaacctcaaatgcagtgtcgtaaaacacaattgtttgagcaata 122  Q
    ||||||||| || ||||| |||||||  || |||||| ||||||  |||||  |||||||||||| |||||  ||  |||| ||||| |||||||||||     
T  2358302 taaatttgcaatgcgaatacgatcaattttggagaatcgttctttcaaatcaagccaaacctcaagtgcagaatcacaaaaaacaatagtttgagcaatg 2358203  T
Q  123 gaatcagaaacaga 136  Q
    || |||||||||||    
T  2358202 gactcagaaacaga 2358189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University