View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559-Insertion-1 (Length: 819)
Name: NF4559-Insertion-1
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 158 - 819
Target Start/End: Original strand, 6249592 - 6250252
Alignment:
| Q |
158 |
tacttttgaatgaaatgcattgaattcatattctnnnnnnncatgtaaaaatatgcccttatatcaatacatgcg----ggataacgtggactgaaatgt |
253 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6249592 |
tacttttgaatgaaatgcattgaattcttattctaaaagaacatgtaaaaatatgcccttatatcaatacatgcgcgcgggataacgtggactgaaatgt |
6249691 |
T |
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| Q |
254 |
attttgcaggtgaagcaaaggttacgtttttgtggaatatttcagtacctcaatctatttggaattgtgataggatacacaattgcggcttctattagca |
353 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249692 |
attttgcaggtggagcaaaggttacgtttt-gtggaatatttcagtacctcaatctatttggaattgtgataggatacacaattgcggcttctattagca |
6249790 |
T |
|
| Q |
354 |
tgacgtgatttcacannnnnnnnnatactttatacaagtaatttttaacaacataaacatgtttaggtctttttagggaagtacacattctaataatagt |
453 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249791 |
tgacgtgagttcacattttttt--atactttatacaagtaatttttaacaacataaacatgtttaggtctttttagggaagtacacattctaataatagt |
6249888 |
T |
|
| Q |
454 |
gttacatcttgtgcgtttatttatatcattatatattttggtttgttcacaagnnnnnnnnnnntattacatacaatctcaaattaatatgtggtatgat |
553 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6249889 |
gttacatcttgtgcgtttatttatatcattatatattttggtttgttcacaagaaaaacaataatattacatacaatctcaaattaatatgtggtatgat |
6249988 |
T |
|
| Q |
554 |
aggaaattggtttaacttcagtttcattggttgtttggttaacagggctatcnnnnnnnntcaaattgtttccatcaacatggggacaaaagcccatgtc |
653 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6249989 |
aggaaattggtttaacttcagtttcattggttgtttggttaacagggctatcaaaaaa--tcaaattgtttccatcaacatggggacaaaagcccatgtc |
6250086 |
T |
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| Q |
654 |
acatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctcatcagttgc |
753 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6250087 |
acatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctcatcagttgc |
6250186 |
T |
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| Q |
754 |
tgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttgcaggtta |
819 |
Q |
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| T |
6250187 |
tgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttgcaggtta |
6250252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 8 - 142
Target Start/End: Original strand, 6249389 - 6249523
Alignment:
| Q |
8 |
gtctttagcttgggccatagctcagctaggttgggttgctggtcctgctgtcatgattttattctctttgcttacagcctatacttattgttatcgcatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6249389 |
gtctttagcttgggccatagctcagctaggttgggttgctggtcctgctgtcatgattttattctctttggttacagcctatacttattgttatcgcacc |
6249488 |
T |
|
| Q |
108 |
ggtgaccctgattccggcaagaaaaactatactta |
142 |
Q |
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|||||||||||||||||||||| ||| |||||||| |
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| T |
6249489 |
ggtgaccctgattccggcaagagaaaatatactta |
6249523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 614 - 819
Target Start/End: Complemental strand, 39428173 - 39427968
Alignment:
| Q |
614 |
tcaaattgtttccatcaacatggggacaaaagcccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaa |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39428173 |
tcaaattgtttccatcaacatggggacaaaagcccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaa |
39428074 |
T |
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| Q |
714 |
ttccagattttgatcaaatatggtggctctcatcagttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttgc |
813 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
39428073 |
ttccagattttgatcaaatctggtggctctcatcagttgctgcagtcatgtctttcacatattccctaattggtctagcacttggaattgccaaagttgc |
39427974 |
T |
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| Q |
814 |
aggtta |
819 |
Q |
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|||||| |
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| T |
39427973 |
aggtta |
39427968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 39428956 - 39428824
Alignment:
| Q |
234 |
gataacgtggactgaaatgtatttt-gcaggtgaagcaaaggttacgtttttgtggaatatttcagtacctcaatctatttggaattgtgataggataca |
332 |
Q |
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|||||| ||||||||||| | |||| ||||||| ||| |||||||| |||| |||| ||||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
39428956 |
gataacatggactgaaatatttttttgcaggtggagctaaggttacatttt-gtgggatattccagtacctaaatctatttggaattgttataggataca |
39428858 |
T |
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| Q |
333 |
caattgcggcttctattagcatgacgtgatttca |
366 |
Q |
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|||||||||| |||||||||||||||||| |||| |
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| T |
39428857 |
caattgcggcatctattagcatgacgtgagttca |
39428824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 39429219 - 39429145
Alignment:
| Q |
8 |
gtctttagcttgggccatagctcagctaggttgggttgctggtcctgctgtcatgattttattctctttgcttac |
82 |
Q |
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|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
39429219 |
gtctttagcttgggccattgctcagctaggttggattgctggtcctgctgtcatgattttattctctttggttac |
39429145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 648 - 819
Target Start/End: Complemental strand, 44315775 - 44315604
Alignment:
| Q |
648 |
catgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctcatc |
747 |
Q |
| |
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|||||||||| |||||||| | ||||||||| ||||| || || ||||||||| |||| |||||||||||||||||| |||| |||||||||||| |
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| T |
44315775 |
catgtcacatttcaagcaatccatacatgatagcatttggagtaatccaaattttcttttctcaaattccagattttgataaaatgtggtggctctcaat |
44315676 |
T |
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| Q |
748 |
agttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttgcaggtta |
819 |
Q |
| |
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|||||| ||| ||||||||||||| |||||||| ||||| || | || | ||||||||||||||||||||| |
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| T |
44315675 |
agttgcagcaatcatgtctttcacctattcctttattggccttggactagcaattgccaaagttgcaggtta |
44315604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 648 - 819
Target Start/End: Complemental strand, 44323711 - 44323540
Alignment:
| Q |
648 |
catgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctcatc |
747 |
Q |
| |
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||||||| || ||| |||||| ||||||||| ||||| ||| |||| |||||||||| ||||||||||||||| || | || |||||||||||| |
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| T |
44323711 |
catgtcatatttcaggcaacccatacatgattgcttttggcgtggcacaacttttcctttctcaaattccagattttcataacatgtggtggctctcaat |
44323612 |
T |
|
| Q |
748 |
agttgctgcattcatgtctttcacatattccttaattggtctagctcttggaattgccaaagttgcaggtta |
819 |
Q |
| |
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|||||||||| ||||||||||| || ||| ||||| ||| |||||||||||| |||||||||||||||| |
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| T |
44323611 |
agttgctgcagtcatgtctttcttctactccacaattgctcttgctcttggaatttccaaagttgcaggtta |
44323540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 744
Target Start/End: Original strand, 40204242 - 40204276
Alignment:
| Q |
710 |
caaattccagattttgatcaaatatggtggctctc |
744 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
40204242 |
caaattccagattttgatcaaatatggtggctctc |
40204276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 744
Target Start/End: Original strand, 40200741 - 40200775
Alignment:
| Q |
710 |
caaattccagattttgatcaaatatggtggctctc |
744 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |
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| T |
40200741 |
caaattccagattttgatcaattatggtggctctc |
40200775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 647 - 745
Target Start/End: Complemental strand, 44306237 - 44306139
Alignment:
| Q |
647 |
ccatgtcacatgtcaagcaacctatacatgatcatgtttggtgtgatacaaattttcctttcacaaattccagattttgatcaaatatggtggctctca |
745 |
Q |
| |
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||||||||||| |||||||||| |||||||||| ||||| || || |||||||| |||| ||||||||||| ||| || | | |||||||||||| |
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| T |
44306237 |
ccatgtcacatttcaagcaacccatacatgatcggttttggagtaatcgaaattttcgtttctcaaattccagagtttcataatacgtggtggctctca |
44306139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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