View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559-Insertion-2 (Length: 806)
Name: NF4559-Insertion-2
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559-Insertion-2 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 369 - 806
Target Start/End: Original strand, 30552778 - 30553224
Alignment:
| Q |
369 |
caacacaaacaaactagtataaccgaaacatcatcattgactcggttgctccgccgcgccgagaaaacaatgactctactccgatcaattttaacggcga |
468 |
Q |
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| T |
30552778 |
caacacaaacaaactagtataaccgaaacaacatcattgactcggttgctccgccgctccgagaaaacaatgactctactccgatcaattttaacggtga |
30552877 |
T |
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| Q |
469 |
ccttactcctcactttcttcttcactctctcaccagctttccaatccgatgagcttctcctcgacgatgaagaattcggccttgaaggcggtcgccctca |
568 |
Q |
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| T |
30552878 |
ccttactcctcactttcttcttcactctctcaccagctttccaatccgacgagcttctcctcgacgatgaagaattcggcctcgaaggcggtcgccctca |
30552977 |
T |
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| Q |
569 |
aacccgtccatcatcacctaacaccg---------ccaccaccaccaccactcgtaagaggattcctgattccgcttccgattcaaagatccagttcaca |
659 |
Q |
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| T |
30552978 |
aacccgtccatcgtcacctaacaccgccgccaccaccaccaccaccaccactcgtaagaggattcctgattccgcttccgattcaaagatccagttcaca |
30553077 |
T |
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| Q |
660 |
ctcgaacacgctttcggcgattccgatttctctgaagctggtaacttctctgctcgtctcaaaacttggagtcacggcgctcaggttcgtcaatttcttt |
759 |
Q |
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| T |
30553078 |
ctcgaacacgctttcggtgattccgatttctctgaagctggtaacttctctgctcgtctcaaaacttggagtcacggcgctcaggttcgtcaatttcttt |
30553177 |
T |
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| Q |
760 |
ttaattgttgatatttttcaaagctagtataataattcgttgattgg |
806 |
Q |
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| T |
30553178 |
ttaattgttgatatttttcaaagctagtataataattcgttgattgg |
30553224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 166 - 363
Target Start/End: Original strand, 30552543 - 30552742
Alignment:
| Q |
166 |
aaaacggaccttcataacaatctttgaaacataaatttcattagccacaaacattaatatatgaacaagtttacctcaaaaaagaaaacaattaatacat |
265 |
Q |
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| T |
30552543 |
aaaatggaccttcacaacaatctttgaaacataaatttcattagccacaaacattaatatatgaacaactttacctcaaaaaagaaaacaattaatacat |
30552642 |
T |
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| Q |
266 |
gaacaacttatttaagtagtttcaatcaacgacataacttaagtacataggttcaagtgtagcagtac--aagactggaaagaccgatcgatcgatcgat |
363 |
Q |
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| T |
30552643 |
gaacaacttatttaaatagtttcaatcaacgacataacttaagtacataggttcaagtgtagctgtacaaaagactggaaagaccgatcgatcgatcgat |
30552742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 30552248 - 30552417
Alignment:
| Q |
8 |
tacaatacatgatacttccgcagtttatgaattatctactaaatacttcttcaaagcgaacaattttaaatcataaaagaaacgatattttaaaaataga |
107 |
Q |
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| T |
30552248 |
tacaatacaagatacttctgcagtttatgaattatctacaagacacttctccaaagtgaataattttaaattataaaagaaacgataccttaaaaataga |
30552347 |
T |
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| Q |
108 |
ctatattacaaatagatacatgataataaattatgagtttgttacaaaaccaacttttaaaacggacctt |
177 |
Q |
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| T |
30552348 |
ctatattacaaatagatacattataataaattacgagtttgttacaaaactaacttttaaaatggacctt |
30552417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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