View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559-Insertion-4 (Length: 348)
Name: NF4559-Insertion-4
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559-Insertion-4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 6191037 - 6191374
Alignment:
| Q |
8 |
ccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttac |
107 |
Q |
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| T |
6191037 |
ccaatgacgtgtgtaattgttgttgtagctctacgtcatagagaatggactctagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttac |
6191136 |
T |
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| Q |
108 |
agcaacatcatcacttgtggaacaggttgcttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattca |
207 |
Q |
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| T |
6191137 |
agcaacatcatcacttgtggaacaggttacttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattca |
6191236 |
T |
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| Q |
208 |
tcttcaaagtttcttagatccattggtgaattttctttacttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttcctt |
307 |
Q |
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| T |
6191237 |
tcttcaaagtttcttagatccattggtgaattttctttacttattggatcagtggtgtcgggaacaataacctg---tccttgtatatttggttttcctt |
6191333 |
T |
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| Q |
308 |
ctgattgcttggtctcatcaaaattgtctttcccatcatag |
348 |
Q |
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| T |
6191334 |
ctgattgcttggtctcatcaaaattgtctttcccatcatag |
6191374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 6184040 - 6184231
Alignment:
| Q |
19 |
tgtaattgttgctgtagctctacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttacagcaacatcat |
118 |
Q |
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| T |
6184040 |
tgtaattgctgctgtagctcgacatcactgagaatggactcaagtgaattttttaataggctttcaaggttatgcaaggcttctcttacagcaacatcg- |
6184138 |
T |
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| Q |
119 |
cacttgtggaacaggttgcttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattcatcttca |
213 |
Q |
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| T |
6184139 |
--cttgtggaacaggttgcttttggcgaggactctggacttcccaacaggatgctatcaagttcagcaaaagggtcatcatctgatccatcttca |
6184231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 336
Target Start/End: Original strand, 6184282 - 6184372
Alignment:
| Q |
246 |
acttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttccttctgattgcttggtctcatcaaaattgtct |
336 |
Q |
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| T |
6184282 |
acttatcagatcattggtttcaggaacaatgatttgttctccttgtatgtttggtttttcttctggattcttggtctcatcacaattgtct |
6184372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 37454568 - 37454249
Alignment:
| Q |
8 |
ccaatgacgtgtgtaattgttgctgtagctctacgtcatagagaatggactcaagtgaattttcaaataggcattcaaggttgtgcaaagcttcttttac |
107 |
Q |
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|||| |||||| |||| |||| ||||||||||| ||| ||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |||| |
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| T |
37454568 |
ccaaagacgtgcgtaactgtttttgtagctctacatcacagagaatggactcaagtgatttttccaatagacattcaaggttatgcaaagcttctcttac |
37454469 |
T |
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| Q |
108 |
agcaacatcatcacttgtggaacaggttgcttttggcggagactctggacttcccagcaggatgctctcaagttcagcaaaagggtcctcatctgattca |
207 |
Q |
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| T |
37454468 |
agcaacatcatcgcttgtggaacaagttgcttttggcgaggactctggacttcccttcaggatcctctcaacttcagaaaaaatgtcctcgtcagatcca |
37454369 |
T |
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| Q |
208 |
tcttcaaagtttcttagatccattggtgaattttctttacttattggatcagtggtgtcgggaacaataacctgtcctccttgtatatttggttttcctt |
307 |
Q |
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| T |
37454368 |
tcttcggatttgctaagatccaccggtgccttttctttgcttattgaaccattggtgtcaggaacaataacttgtcctccttgtatatttgcttttcctt |
37454269 |
T |
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| Q |
308 |
ctgattgcttggtctcatca |
327 |
Q |
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| T |
37454268 |
ttgattgcttggtctcatca |
37454249 |
T |
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