View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559-Insertion-6 (Length: 301)
Name: NF4559-Insertion-6
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559-Insertion-6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 20371932 - 20371639
Alignment:
| Q |
8 |
cttcattcttgtctttccatttccttactgtttgctcacaatcgtcgttgagttcttgaatgcaagtatttcttgaaagcccatactctaactcctccac |
107 |
Q |
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| T |
20371932 |
cttcattcttgtctttccatttccttactgtttggtcacaatcgtcgttgagttcttgaatgcaagcatttcttgaaagcccatactctaactcctccac |
20371833 |
T |
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| Q |
108 |
aatttttattttgcaagttttgtcatcaaccagtaattcttccatcacattaatggactcaaaagaatttgttgtgatcaaaatacgggcaaagtgaagt |
207 |
Q |
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| T |
20371832 |
aatttttattttgcaagttttgtcatcaaccagtaattcttccatcacattaatggtctcaaaagaatttgtagtgatcaaaataggggcaaagtgagat |
20371733 |
T |
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| Q |
208 |
cgttcaatattggatctacaagaatctacctttaatagccttctatatgtcgaagaaaataaattaagaaagtgaatattccaaacatgcaaca |
301 |
Q |
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| T |
20371732 |
cgttcaatatttgatttacaagaatctacctttaatagccttctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaaca |
20371639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 118 - 301
Target Start/End: Complemental strand, 20364084 - 20363904
Alignment:
| Q |
118 |
ttgcaagttttgtcatcaaccagtaattcttccatcacattaatggactcaaaagaatttgttgtgatcaaaatacgggcaaagtgaagtcgttcaatat |
217 |
Q |
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| T |
20364084 |
ttgcaagtcttgtaatcaaccagtaattcatccatcacattaatgg-ctcaa--gaatttatagtgatcaaaataggggcaaagtgaaatcgttcaatat |
20363988 |
T |
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| Q |
218 |
tggatctacaagaatctacctttaatagccttctatatgtcgaagaaaataaattaagaaagtgaatattccaaacatgcaaca |
301 |
Q |
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| T |
20363987 |
tcgatttacaagaatctacctttaatagccttctatatgtcgaagaaatcaaattaagaaagtgaatattccaaacatgcaaca |
20363904 |
T |
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