View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_high_1 (Length: 712)
Name: NF4559_high_1
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 321
Target Start/End: Complemental strand, 5315390 - 5315078
Alignment:
| Q |
10 |
acatcatcactatattcattttgactcttcctaccaccgttttcttccttccatttcttggatttctagggcttatcatgttactgaagatgatattctt |
109 |
Q |
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| T |
5315390 |
acatcatcactatattcattttgactcttcctaccaccgttttcttccttccatttcttggatttctagggcttatcatgttactgaagatgatattctt |
5315291 |
T |
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| Q |
110 |
cattctcatggtcttgatgctcttgtcatcattaggctcttcaaatttgggttagttaactttcaccctcattcttccaaatcttaatagctagctagcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5315290 |
cattctcatggtcttgatgctcttgtcatcattaggctcttcaaatttgggttagttaactttcactctcattcttccaaatcttaatagctagctagct |
5315191 |
T |
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| Q |
210 |
agcttatttatttgtttgtatttatagtttaattca--tatagagtttttggtagataagtttatgtcatatttggataaataacttatagattaaatgc |
307 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||||||||||| | ||| ||| |
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| T |
5315190 |
agcttatttctttgtttgtatttatagtttaattcatatatagagtttttggtagataagttt-tatcatgtttggataaataacttataaagtaagtgc |
5315092 |
T |
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| Q |
308 |
ttatcataggctat |
321 |
Q |
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|||||||||||||| |
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| T |
5315091 |
ttatcataggctat |
5315078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 410 - 586
Target Start/End: Complemental strand, 5314989 - 5314808
Alignment:
| Q |
410 |
agacagttttactataagtggatgtgacaagtgtgctttgtctaatacacatgtaaaattgtctttccctcaatgcacaagtcacacttagttttcgtta |
509 |
Q |
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| T |
5314989 |
agacagttttactataagtggacgtgacaagtgtgttttgtctaatatacatgtaaaattgtcttacactaaatgcgcaagtcacacttatatttggtta |
5314890 |
T |
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| Q |
510 |
cccctgacc-----cgtaactaaatttggttacgggtatgacaagtgtgtttttaataattgaatcaataagtcacatcata |
586 |
Q |
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| T |
5314889 |
tccttgaccacacacgtaactaaatttggttacgggtgtgacaagtgtgtcttttataattggatcaataagtcacatcata |
5314808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 5315074 - 5315018
Alignment:
| Q |
351 |
agaatttttctataaatttaaggttttgtctaatatacaggtaaaattgtcttgcacc |
408 |
Q |
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| T |
5315074 |
agaatttttgtataaattaatggttttgtcta-tatacaagtaaaattgtcttgcacc |
5315018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 598 - 696
Target Start/End: Complemental strand, 34607583 - 34607485
Alignment:
| Q |
598 |
gctactcacgtagccttttcaggatgtgctgaccaatttgcaggctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
696 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34607583 |
gctactcacgtagccttttcaggatgtgctgaccaatttgcaggctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
34607485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 598 - 696
Target Start/End: Complemental strand, 34370004 - 34369906
Alignment:
| Q |
598 |
gctactcacgtagccttttcaggatgtgctgaccaatttgcaggctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
696 |
Q |
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|||||||||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
34370004 |
gctactcacgtagcctttgcaggctgtgctgacaaatttgcatgctttgcaatttgccaggggtttttggtggcacaacccttggcaaactattgtacc |
34369906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 599 - 696
Target Start/End: Original strand, 22128840 - 22128937
Alignment:
| Q |
599 |
ctactcacgtagccttttcaggatgtgctgaccaatttgcaggctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
696 |
Q |
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| T |
22128840 |
ctactcacgtagcctttgcaggctgtgctgccaaatttgcaggctttgcaatttgccaggggtttttcgtggcacaacccttgacaaattgttgtacc |
22128937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 598 - 696
Target Start/End: Original strand, 5023414 - 5023513
Alignment:
| Q |
598 |
gctactcacgtagccttttcaggatgtgctgaccaa-tttgcaggctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
696 |
Q |
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|||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||| |
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| T |
5023414 |
gctactcacgtagcctttgcaggctgtgcagaccaaatttgcaggctttgcaatttgccagggatttttcgaggcacaacccttggcaaattgttgtacc |
5023513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 598 - 696
Target Start/End: Complemental strand, 7622468 - 7622370
Alignment:
| Q |
598 |
gctactcacgtagccttttcaggatgtgctgaccaatttgcaggctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
696 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7622468 |
gctactcacgtagccttttcaggatgtgctgaccaatttgcagcctttgcaatttgccaggggtttttggtggcacaacccttggcaaagtgttgtacc |
7622370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 598 - 696
Target Start/End: Complemental strand, 28952420 - 28952321
Alignment:
| Q |
598 |
gctactcacgtagccttttcaggatgtgctgaccaatttgcaggctttgcaatttgccaggggt-ttttggtggcacaacccttggcaaagtgttgtacc |
696 |
Q |
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|||||||||||||||||| |||| ||||||| | |||||||||| ||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||| |
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| T |
28952420 |
gctactcacgtagcctttgcaggctgtgctgccaaatttgcaggttttgcaatttgccaggggttttttcgtggcacaacccctggcaaattgttgtacc |
28952321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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