View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4559_high_17 (Length: 304)

Name: NF4559_high_17
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4559_high_17
NF4559_high_17
[»] chr3 (12 HSPs)
chr3 (1-288)||(6940524-6940811)
chr3 (143-265)||(6943856-6943977)
chr3 (65-129)||(6943755-6943819)
chr3 (45-102)||(6774547-6774604)
chr3 (60-151)||(6526136-6526228)
chr3 (74-121)||(6549011-6549058)
chr3 (60-151)||(6842914-6843006)
chr3 (42-102)||(7584562-7584622)
chr3 (226-288)||(6548873-6548933)
chr3 (48-102)||(8572342-8572398)
chr3 (64-107)||(6785261-6785304)
chr3 (226-264)||(8572142-8572180)
[»] scaffold0425 (1 HSPs)
scaffold0425 (60-116)||(11041-11097)


Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 6940524 - 6940811
Alignment:
Q  1 tcaatatgttatatgacaatttgttgcagataactttgaaacatagctgtctcattggttataattattatgccatccagctgcatttttcaaagtaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6940524 tcaatatgttatatgacaatttgttgcagataactttgaaacatagctgtctcattggttataattattatgccatccagctgcatttttcaaagtaaaa 6940623  T
Q  101 taaatttcatgattcaatcagcgatataacaaagcttttaatacaactttagacaactcagtagaattttgaattaagaggtcatgatatgtccatatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6940624 taaatttcatgattcaatcagcgatataacaaagcttttaatacaactttagacaactcagtagaattttgaattaagaggtcatgatatgtccatatca 6940723  T
Q  201 ttattggcaaaagtgtatcccctaaaaatatcaagattggattagaagcaattaaaggcaagaattgaagctctgttatatgatttct 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  6940724 ttattggcaaaagtgtatcccctaaaaatatcaagattggattagaagcaattaaaggcaagaattaaagctctgctatatgatttct 6940811  T

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Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 143 - 265
Target Start/End: Original strand, 6943856 - 6943977
Alignment:
Q  143 acaactttagacaactcagtagaattttgaattaagaggtcatgatatgtccatatcattattggcaaaagtgtatcccctaaaaatatcaagattggat 242  Q
    |||||||| ||||||||||||| ||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6943856 acaactttcgacaactcagtaggattttgaat-aagaggtcatgatatgtcgaaatcattattggcaaaagtgtatcccctaaaaatatcaagattggat 6943954  T
Q  243 tagaagcaattaaaggcaagaat 265  Q
    |||||||||||||||||||||||    
T  6943955 tagaagcaattaaaggcaagaat 6943977  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 6943755 - 6943819
Alignment:
Q  65 ttattatgccatccagctgcatttttcaaagtaaaataaatttcatgattcaatcagcgatataa 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6943755 ttattatgccatccagttgcatttttcaaagtaaaataaatttcatgattcaatcagcaatataa 6943819  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 6774604 - 6774547
Alignment:
Q  45 agctgtctcattggttataattattatgccatccagctgcatttttcaaagtaaaata 102  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  6774604 agctgtctcattcgttataattattatgccatccagcggcatttttcaaagtaaaata 6774547  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 6526228 - 6526136
Alignment:
Q  60 tataattattatgccatccagctgcatttttcaaagtaaaataaatttcatgattc-aatcagcgatataacaaagcttttaatacaacttta 151  Q
    ||||||||||||||||||||| || |||||||||||||||||| ||||||| |||| ||||||   ||||| |||  ||||||||||||||||    
T  6526228 tataattattatgccatccagttgaatttttcaaagtaaaatacatttcataattcaaatcagtactataataaaagttttaatacaacttta 6526136  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 6549058 - 6549011
Alignment:
Q  74 catccagctgcatttttcaaagtaaaataaatttcatgattcaatcag 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  6549058 catccagctgcatttttcaaagtaaaataagtttcatgattcaatcag 6549011  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 151
Target Start/End: Complemental strand, 6843006 - 6842914
Alignment:
Q  60 tataattattatgccatccagctgcatttttcaaagtaaaataaatttcatgattc-aatcagcgatataacaaagcttttaatacaacttta 151  Q
    ||||||||||||| ||||||| || |||||||||||||||||| ||||||| |||| ||||||   ||||| |||  ||||||||||||||||    
T  6843006 tataattattatgtcatccagttgaatttttcaaagtaaaatacatttcataattcaaatcagtactataataaaagttttaatacaacttta 6842914  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 7584562 - 7584622
Alignment:
Q  42 catagctgtctcattggttataattattatgccatccagctgcatttttcaaagtaaaata 102  Q
    |||| |||||||| | ||||||||||||||||||| |||  ||||||||||||||||||||    
T  7584562 catatctgtctcaatcgttataattattatgccatgcagaggcatttttcaaagtaaaata 7584622  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 6548933 - 6548873
Alignment:
Q  226 aaatatcaagattggattagaagc-aattaaaggcaagaattgaagctctgttatatgatttct 288  Q
    |||||||||||||||||||||||| ||||||||   | |||| |||||||||||||||||||||    
T  6548933 aaatatcaagattggattagaagcaaattaaag---aaaattaaagctctgttatatgatttct 6548873  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 8572398 - 8572342
Alignment:
Q  48 tgtctcattggttataattattat--gccatccagctgcatttttcaaagtaaaata 102  Q
    ||||||||||||| ||||||||||  | ||||||||| |||||||||||||||||||    
T  8572398 tgtctcattggttttaattattatatgtcatccagctacatttttcaaagtaaaata 8572342  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 6785304 - 6785261
Alignment:
Q  64 attattatgccatccagctgcatttttcaaagtaaaataaattt 107  Q
    ||||||||||||| || |||||||||||||||||||||| ||||    
T  6785304 attattatgccattcaactgcatttttcaaagtaaaatatattt 6785261  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 8572180 - 8572142
Alignment:
Q  226 aaatatcaagattggattagaagcaattaaaggcaagaa 264  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  8572180 aaatatcaagattggtttagaaacaattaaaggcaagaa 8572142  T

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Target: scaffold0425 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 11097 - 11041
Alignment:
Q  60 tataattattatgccatccagctgcatttttcaaagtaaaataaatttcatgattca 116  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  11097 tataattattatgccatccagctgaatttttcaaagtaaaatacatttcataattca 11041  T

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