View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_high_18 (Length: 294)
Name: NF4559_high_18
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 275
Target Start/End: Complemental strand, 18937085 - 18936822
Alignment:
| Q |
12 |
acagagccagagaggtcgtgaaatcagaacagttcgaacaagggaaggaagtctgaagaagagtctaccaaatatctagactcaaaacaaaaaggtagat |
111 |
Q |
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| T |
18937085 |
acagagccagagaggtcgtgaaatcagaacagttcgaacaagggaaggaagtctgaagaagagtctaccaaatatctagactcaaaacaaaaaggtagat |
18936986 |
T |
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| Q |
112 |
tgaattaataacaaaataataggttataagaaatgacactgccaattaatccaatttgattcataaattctcattggctccttacattataacnnnnnnn |
211 |
Q |
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| T |
18936985 |
tgaattaataacaaaataataggttataagaaatgacactgccaattaatccaatttgattcataaattctcattggctccttacattataacaaaataa |
18936886 |
T |
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| Q |
212 |
nnnnnnnnnnnnnnntctgcatatggaagcacaaatttagaccattgttacttacatttccatc |
275 |
Q |
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| T |
18936885 |
aaaataaaataaaaatctgcatatggaagcacaaatttagaccattgttacttacatttccatc |
18936822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 34723034 - 34723146
Alignment:
| Q |
12 |
acagagccagagaggtcgtgaaatcagaacagttcgaacaagggaaggaagtctgaagaagagtctaccaaatatctagactcaaaacaaaaaggtagat |
111 |
Q |
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||||| ||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| | || |
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| T |
34723034 |
acagatccagaaaggtcgtgaaatcagaatgcttcgaacaagtgaaggaagtctgaagaagagtctaccaaatatctaaactc-aaacaaaaa---atat |
34723129 |
T |
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| Q |
112 |
tgaattaataacaaaat |
128 |
Q |
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| T |
34723130 |
ggaattaataacaaaat |
34723146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 278
Target Start/End: Original strand, 34723218 - 34723251
Alignment:
| Q |
245 |
aatttagaccattgttacttacatttccatctga |
278 |
Q |
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| T |
34723218 |
aatttagaccattgttacttacatttccatctga |
34723251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 7883904 - 7883981
Alignment:
| Q |
12 |
acagagccagagaggtcgtgaaatcagaacagttcgaacaagggaaggaagtctgaagaagagtctaccaaatatcta |
89 |
Q |
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||||| ||||| ||| ||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
7883904 |
acagaaccagaaaggccgtgatatcagaacagctcgagcaagggaaggaatagtgaagaagagtctaccaaatatcta |
7883981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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