View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4559_high_20 (Length: 279)
Name: NF4559_high_20
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 3251131 - 3250879
Alignment:
| Q |
1 |
actcatcttacaaaatcaattcataaaatcaaaatcatataatataatatgaattgctggcatcaaaagcaatttattttcccttcttttggtcctatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3251131 |
actcatcttacaaaatcaattcataaaatcaaaatcatataatataatatgaattgctgacatcaaaagcaatttattttccctttttttggtcctatgt |
3251032 |
T |
|
| Q |
101 |
atttcaaagtatgtgctcagctgaggtggttatgaggagtgtgaaaaaaggaaagtagttgatgccatcactatataaataccctttatcctttactctt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3251031 |
atttcaaagtatgtgc-----------------gaggagtgtgaaaaaaggaaagtagttgatgccatcactatataaataccctttatcctttactctt |
3250949 |
T |
|
| Q |
201 |
agtcacagtctaagtaagtgcatgcactccaaacacattggttccttaaaccattttatgctttcctatg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3250948 |
agtcacagtctaagtaagtgcatgcactccaaacacattggttccttaaaccattttatgctttcctatg |
3250879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 3271523 - 3271484
Alignment:
| Q |
215 |
taagtgcatgcactccaaacacattggttccttaaaccat |
254 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3271523 |
taagtgcatctactccaaacacattggttccttaaaccat |
3271484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 3285034 - 3284995
Alignment:
| Q |
215 |
taagtgcatgcactccaaacacattggttccttaaaccat |
254 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3285034 |
taagtgcatctactccaaacacattggttccttaaaccat |
3284995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University