View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4559_high_22 (Length: 265)
Name: NF4559_high_22
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 30375029 - 30375272
Alignment:
| Q |
18 |
gttgaggtataatgtgatttaaggacaaatttttctctttttgtgtttagaaaacttttggatcaaaatatgtaaaaatcattttgaaatatataattcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || |||||||||||| ||||||||||||||| |
|
|
| T |
30375029 |
gttgaggtataatgtgatttaaggacaaatttttctctttttgtgtttagaaaacttttgaatcatataatttaaaaatcatttcgaaatatataattcg |
30375128 |
T |
|
| Q |
118 |
agaagataaaatgtgaattttaaagggcacacaagatgtgtataaggtggaaaaataatttctctagccacaatggaattccacaaagatgaaaataacc |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30375129 |
agaaggtaaaatgtgaattttaaagggcacacaagatgtgtataaggtggaaagataatttctctagccacagtggaattccacaaagatgaaaataacc |
30375228 |
T |
|
| Q |
218 |
aaattaaaatggccaccaactattgttgtcaatttgatgatgtc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30375229 |
aaattaaaatggccaccaactattgttgtcaatttcatgatgtc |
30375272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University