View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_high_27 (Length: 242)
Name: NF4559_high_27
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1324952 - 1324740
Alignment:
| Q |
1 |
caacttattttcctaattagatggtactacctatttaatttactttttacaattttcacatatattaaaaaacaagtatgaatattttcaaaatattatt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1324952 |
caacttatttgcctaattagatggtactacctatttaatttaccttttacaattttcacatatattaaaaaacaagtatgaatattttcaaaatattctt |
1324853 |
T |
|
| Q |
101 |
ctttacatagatgtgtttaactcatacttcttatctatcaagacaccttttctttaagaataaaaatttaactcagtattttagagtttagaacactcac |
200 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
1324852 |
cttt----------gtttaactcatacttcttatctaccaagacaccttttctttatgagtaaaaatttaactcagtattttagagtttagaacactcac |
1324763 |
T |
|
| Q |
201 |
acacataacgatgtatgatctct |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1324762 |
acacataacgatgtatgatctct |
1324740 |
T |
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