View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4559_high_6 (Length: 500)
Name: NF4559_high_6
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 44611326 - 44611793
Alignment:
| Q |
18 |
atcttgtggcacttggagtagggggaataaaaggttcacttcctcctcatggagctgaacaatttgatgagactacaccagaaggaagaaagaaaaggtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611326 |
atcttgtggcacttggagtagggggaataaaaggttcacttcctcctcatggagctgaacaatttgatgagactacaccagaaggaagaaagaaaaggtc |
44611425 |
T |
|
| Q |
118 |
tgaattttttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggtgtggattgaagacaacaaaggatggcagtggggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611426 |
tgaattttttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggtgtggattgaagacaacaaaggatggcagtggggt |
44611525 |
T |
|
| Q |
218 |
ttaggtgtatcaactgcttcaatattgctctccattccagtttttcttcttggttcacacaagtatagaaccaaagttccagctggaagccccatcacac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611526 |
ttaggtgtatcaactgcttcaatattgctctccattccagtttttcttcttggttcacacaagtatagaaccaaagttccagctggaagccccatcacac |
44611625 |
T |
|
| Q |
318 |
ctatgttcaaggtatactttagaggatcctgattccctcctgtcagagaagcaggtattagaaggaatggattctatacgtgaaaaatttcagtcattgg |
417 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
44611626 |
ctatgttcaaggtacactttagaggatcctgattccctcctgtcagagaagcaggtatttgaaggaatggattctatacatgaaaaatttcagtcgttgg |
44611725 |
T |
|
| Q |
418 |
atgaagattgttcggattatattttaagttatgtcttaaatcaaaatcatccgattttcatccaacag |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611726 |
atgaagattgttcggattatattttaagttatgtcttaaatcaaaatcatccgattttcatccaacag |
44611793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 25171871 - 25171801
Alignment:
| Q |
125 |
tttaactactttgtcttcagcctgtcatgtggtgcattgtttgcagttacttttgtggtgtggattgaaga |
195 |
Q |
| |
|
||||||||||| |||| ||| | ||||||||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
25171871 |
tttaactacttcatctttagcttagcatgtggtgcacttattgcagttacttttgttgtgtggattgaaga |
25171801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University