View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_high_8 (Length: 422)
Name: NF4559_high_8
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 397
Target Start/End: Original strand, 2582139 - 2582531
Alignment:
| Q |
6 |
attgataacttaaacaactcctctggttgaacctcttttcctgagccaacaatagaactaagactgttataacatgaatctttgtacaatgtaacatcac |
105 |
Q |
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| T |
2582139 |
attgataacttaaacaactcctcaggttgaacctcttttcctgagccaacaatagaactaagactgttataacatgaatctttgtacaatgtaacatcac |
2582238 |
T |
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| Q |
106 |
aaacagctttcatagaattagtcactgaattttgagatgcattattgttgttatcatcatcattttttgagttaacaactcctaatacagctgcaattac |
205 |
Q |
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| T |
2582239 |
aaacagctttcatagaattagtcactgaattttgagatgcattattgttgttatcatcatcattttttgagttaacaactcctaatacagctgcaattac |
2582338 |
T |
|
| Q |
206 |
aacaccaatgaagattattgaggataagc-tatgattgtgattctctttcgggtttttctttttgcttctaacatcatttgatcacgttcatctactttt |
304 |
Q |
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| T |
2582339 |
aacaccaatgaagattattgaagataagcttatgattgtgattctctttcgggtttttctttttgcttctaacatcatttgatcatgttcatcaactttt |
2582438 |
T |
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| Q |
305 |
ccatagattttgaagaaagatatgttcaatatttacatgttttaatgtttgttctattcaatttgtgttttcaattgtctttaattatatata |
397 |
Q |
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| T |
2582439 |
ccataggatttgaagaaagacatgttcaatgtttacaaggtttaaggtttgtgctatacaatttgtgttttcaattggctttaattatttata |
2582531 |
T |
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