View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_high_9 (Length: 415)
Name: NF4559_high_9
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 46 - 407
Target Start/End: Original strand, 798680 - 799041
Alignment:
| Q |
46 |
gaatcctcatattgatgatnnnnnnnctcctgcttgaggagaaacatacctaaatggtgtgtatagtgcaagttagaatcttcatattgaatgaaaaagt |
145 |
Q |
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| T |
798680 |
gaatcctcatattgatgataaaaaaacttctgcttgaggagaaacatacctaaatggtgtgtatagtgcaagttagaatcttcatattgaatgaaaaagt |
798779 |
T |
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| Q |
146 |
aatggggagcatgcgcagattgtgtgctgagtatgagttagaattttcacattgaatggttgatcttggctcgagatgatgatgcatcggactctcctca |
245 |
Q |
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| T |
798780 |
aatggggagcatgcgtagattgtgtgctaagtatgagttagaaatttcgcattgaattattgatcttggctcgagatgatgatgcatcgggctctcctca |
798879 |
T |
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| Q |
246 |
tgacccaacattcctacagagtgtatttggatgtgtaaattatcattttaagcaattcaaactttcaattttttaataaattagatgcctaatggacaca |
345 |
Q |
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| T |
798880 |
tgacccaacattcctcaagagtgtatttggatgggtaaattataattttaggaaattcaaattttccattttttaatagatgagtggcctaatggccaca |
798979 |
T |
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| Q |
346 |
cacggcaaaatgaaggttgtaaacacaagatcaaaaacgtgcaccaaaatgaaatgacctca |
407 |
Q |
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|||||||||||||||| || |||| | |||||||| ||||||||| | |||||||| ||||| |
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| T |
798980 |
cacggcaaaatgaagggtggaaacccgagatcaaacacgtgcacccacatgaaatgtcctca |
799041 |
T |
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