View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4559_low_11 (Length: 375)
Name: NF4559_low_11
Description: NF4559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4559_low_11 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 26229164 - 26228820
Alignment:
| Q |
12 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaattgtctattaggctcggatgtcattaaaggagcaatgctacaatttacaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26229164 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaatggtctattaggctcggatgtcattaaaggagcaatgctacaatttacaga |
26229065 |
T |
|
| Q |
112 |
tctttcattggctggtacttgactaattgatgatgaacttgattccattgagtagtgaagagatatatgatttggcagtgaagatgtatttatagttgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26229064 |
tctttcattggctggtacttgactaattgatgatgaacttgattccattgagtagtgaagagatatatgatttggcagtgaagatgtatttatagttgaa |
26228965 |
T |
|
| Q |
212 |
acctattcttagatttgagtcatacattnnnnnnnnnntgtaatatattatttgatgtgtaattttggatgtatcttgtttgtccttattgagtttaata |
311 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26228964 |
acctattcttagatttgagtcatacatt-aaaaaaaaatataatatattatttgatgtgtaattttggatgtatcttgtttgtccttattgagtttaata |
26228866 |
T |
|
| Q |
312 |
aaaaacaatataatataatttgttttgtataaaattatatgaagct |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26228865 |
aaaaacaatataatataatttgttttgtataaaattatatgaagct |
26228820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 33548664 - 33548473
Alignment:
| Q |
12 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaattgtctattaggctcggatgtcattaaaggagcaatgctacaatttacaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33548664 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaatggtctattaggctcggatgtcattaaaggagcaatgctacaatttacgga |
33548565 |
T |
|
| Q |
112 |
tctttcattggctggtacttgactaattgatgatgaacttgattccattgagtagtgaagagatatatgatttggcagtgaagatgtattta |
203 |
Q |
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| T |
33548564 |
tctttcattggctggtacttgactaattgatgatgaacttgattccattgagtagtgaagagatatatgatttggcagtgaagatgtattta |
33548473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 33548456 - 33548351
Alignment:
| Q |
252 |
taatatattatttgatgtgtaattttggatgtatcttgtttgtccttattgagtttaataaaaaacaatataatataatttgttttgtataaaattatat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33548456 |
taatatattatttgatgtgtaattttggatgtatcttgtttgtcgttattgagtttaataaaaaacaatataatataatttgttttgtataaaattatat |
33548357 |
T |
|
| Q |
352 |
gaagct |
357 |
Q |
| |
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|||||| |
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| T |
33548356 |
gaagct |
33548351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 133821 - 133492
Alignment:
| Q |
12 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaattgtctattaggctcggatgtcattaaaggagcaatgctacaatttacaga |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
133821 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaatggtctattaggctcgaatgtcattaaatgagcaatgctgtaatttacaga |
133722 |
T |
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| Q |
112 |
tctttcattggctggtacttgactaattgatgatgaacttgattccattgagtagtgaagagatatatgatttggcagtgaagatgtatttatagttgaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
133721 |
tctttcattggctggtacttgactaattgatgatgaaattgattccattgagtaatgaagagttatatgatttggcagtgaagatgtatttatacttgaa |
133622 |
T |
|
| Q |
212 |
acctattcttagatttgagtcatacatt--nnnnnnnnnntgtaatatattatttgatgtgtaattttggatgtatcttgtttgtccttattgagtttaa |
309 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
133621 |
acctattcttagatttgagtcatacattaaaaaaaaataatgtaatatattatttgatgtgtaatttttgatgtatcttgtttgtccttattgagtttaa |
133522 |
T |
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| Q |
310 |
taaaaaacaatataatataatttgttttgt |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
133521 |
taaaaaacaatataatataatttgttttgt |
133492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 356
Target Start/End: Original strand, 23961740 - 23962085
Alignment:
| Q |
12 |
atgaattgagaaagagtagtattacatcagtgcagacagctatgaagaattgtctattaggctcggatgtcattaaaggagcaatgctacaatttacaga |
111 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||| ||||||||||||||||||||||| |||||||| || |
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| T |
23961740 |
atgaagtgaaaaagagtagtattacatcagtgcggacagctatgaagaatggtctattatgctcagatgtcattaaaggagcaatgctgcaatttacgga |
23961839 |
T |
|
| Q |
112 |
tctttcattggctggtacttgactaattgatgatgaacttgattccattgagtagtgaagagatatatgatttggcagtg-aagatgtatttatagttga |
210 |
Q |
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||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
23961840 |
tctttcattggttggtacttgactaattggcgatgaagttgattccattgagtagtgaagagttatatgatttggcagtgtaagatgtatttatagttga |
23961939 |
T |
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| Q |
211 |
aacctattcttagatttgagtcatacattnnnnnnnnnntgtaatatattatttgatgtgtaattttggatgtatcttgtttgtccttattgagtttaat |
310 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23961940 |
aacctattcttagatttgagtcatacattaaaaaaataatgtaatatattatttgacgtgtaattttcgatgtatcttgtttgtccttattgagtttaat |
23962039 |
T |
|
| Q |
311 |
aaaaaacaatataatataatttgttttgtataaaattatatgaagc |
356 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23962040 |
aaaaaacaatataatataatttgttttgtataaaagtatatgaagc |
23962085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 18059759 - 18059831
Alignment:
| Q |
89 |
ggagcaatgctacaatttacagatctttcattggctggtacttgactaattgatgatgaacttgattccattg |
161 |
Q |
| |
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||||| ||||||||||| || ||||||| ||| ||||| || |||||||||||| |||||||||||||||| |
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| T |
18059759 |
ggagctatgctacaattaactgatctttgattttgtggtagttcactaattgatgaagaacttgattccattg |
18059831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Complemental strand, 17020609 - 17020528
Alignment:
| Q |
80 |
gtcattaaaggagcaatgctacaatttacagatctttcattggctggtacttgactaattgatgatgaacttgattccattg |
161 |
Q |
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|||||||| ||||| ||||| ||||| || ||||||| ||| ||||| || |||||||||||| || ||||||||||||| |
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| T |
17020609 |
gtcattaatggagctatgctgcaattaactgatctttgattttgtggtagttcactaattgatgaagagcttgattccattg |
17020528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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